Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01467 ATGATTTCAAGGGCCACATCTAGCTTCCAAAATCATCAAGGGCTTCGGATGTTCCCTGACCCCGAAGATTTGGTGTCACCCTCAGTGGAGTCTGGCTCAGCTTCACACTCCAGTACCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGGTTGGTGAGGTGCAGACCCTAGTAGGTGTTATTCTCTCCCCAAATGAAAGCCTACCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCATAGTCACTGCCACATCAATGATGCTCACCTGCCAACAGATGGCTCTCACTACTACCCCTTCAGGTACTAATGATAATACTACATGCACCAACAAATTGCACCAGCTGAACAAGTTATTGCCTCACTCAAATTTTGGCACAAATAGAAGTGTGCTTGGTAACATAGGCATAGATATCAATGACCATCATCAGGGTTTATTTTCTAGCTCTGAGTCAGAGGCACTGGACTGGTTTAGTGAAAGCTATAACAATAACGAGGATAATAGCAATATTATTAGTAAGACTAAGGAAGATGATCCAAGCGTTGTAGTTAGTGAAAACAATATGATTATTAGTAGAGGTGGAGAAGAACATGAACCTAACAAAGAATGGTATAATCATAGAGGGCTTTCACCAAAGAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACGCACTATTGTCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCATTGAGCAACCCAATTAAGAATATGGGGAAGTTAGAAAGGGAAAGCGAGATTTTGATGAGCCTGAAGCCAAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCGAAAGCATGCCAAGTTCCAGCCATTGAAGTCTATGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCCAAAATGTATGTGTGCAAGAGATGCAACCAGAAGCAGTTCTCTGTGCTCTCTGACCTAAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCTCATGTGGGACTTCGTTTTCTAGGAAAGACAAACTCATGGGCCATGTCGCTTTGTTCGTGGGGCACCAACCAGCTATAACCAATATTGCTCTGTCATCATACTCAGGAAAATTGGAGCAGCACCCATTGCAAATGCAGATTGATGGTAGCTCAAGATGA 1245 0.4361 MISRATSSFQNHQGLRMFPDPEDLVSPSVESGSASHSSTLLFNLSILKDKVGEVQTLVGVILSPNESLPESTSMAISSMNSTIQEIIVTATSMMLTCQQMALTTTPSGTNDNTTCTNKLHQLNKLLPHSNFGTNRSVLGNIGIDINDHHQGLFSSSESEALDWFSESYNNNEDNSNIISKTKEDDPSVVVSENNMIISRGGEEHEPNKEWYNHRGLSPKNSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNMGKLERESEILMSLKPKRYSCPQEGCRWNRKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFVGHQPAITNIALSSYSGKLEQHPLQMQIDGSSR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01467 414 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 30 391 IPR044300 GO:0010044|GO:0010447
Phco10g01467 414 Gene3D Classic Zinc Finger 235 315 - -
Phco10g01467 414 MobiDBLite consensus disorder prediction 1 31 - -
Phco10g01467 414 SMART c2h2final6 294 327 IPR013087 -
Phco10g01467 414 SMART c2h2final6 237 259 IPR013087 -
Phco10g01467 414 SMART c2h2final6 332 354 IPR013087 -
Phco10g01467 414 SUPERFAMILY beta-beta-alpha zinc fingers 235 262 IPR036236 -
Phco10g01467 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Phco10g01467 414 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Phco10g01467 414 Pfam Zinc finger, C2H2 type 237 259 IPR013087 -
Phco10g01467 414 FunFam Zinc finger protein 574 236 261 - -
Phco10g01467 414 Gene3D Classic Zinc Finger 330 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01467 Phco-Chr10 37329706 37330950 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g01467 zf-C2H2 0.00017 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01467 10 37329706 37330950 Phco10g01467 10 37329706 37330950 ECH
Phco10g01467 10 37329706 37330950 Phco9g00954 9 7768448 7769587 PCT