Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01462 ATGGCGAAGGGCACCGATTCCGACGAGTTCGTGTTGCTTTCTAGGGTCCGGACTGGTCTGAAGAGGGAGTTTGCCTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGCTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGGCCCGACCCTCCTGTTCAGACCACATCTTCCCGGAAACGGTCAAGGAAGACCGTGGAGCCGAAAGCGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTTGTGGATCTTCAGAGCGACGATGAACCGAAGAATAATCACGCGGGAGAATCAGAGTCTGCGGCAATGTTGGCTTGTGAAGAGGAAACAAAGAGTGATGTGGCCATGGAAAATATTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCAGCGAAGAGGAGCCGAAAGTGTTGGAAACTGTTATCAGCGAAGAGGAGCCGAAAGTGTTGGAAACTGTTATCAGCGAAGAGGAGCCGAAGGTGTTGGATAGTGTTGTCAACGAGGAGGAGCCTGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGATGAGATGGCACAACCTCTTAGCGAAATTAACAAGGAATCGGAGAAGGGTGTTTTGGGAGGTAAGGTACCTAGTGGGGAAACCCTTGTTTTGGAGGATAATGACGACAAGGGGAAGAAGAAGAAGAGAATGAAAAAGCGGTTGGAGAGGCCTCAGACTGTGAGAAGGTTTACGCGGTCGTCATTGAAGGAAAAACCCGAGGAAACAAATGATGAGAAACATGTTGGTACGGTTGGACTTGATGATGCTATTCAGAGGGAATCAGAAACTGAGGCTTCGGTGTTAATGACCACTCCTAGTTCGGGAAGATTTTCGAATTCTAGGTTGAGGAAGTTTCCTACCAAGTTGAAGGATCTTCTGGCTACGGGGATTCTTGACGGATTGACAGTGAGGTACATGAAGGGATCAAAGGCACGAAAAAATGGAGAAACAGGGCTTCAAGGAGTGATTCAAAACTCTGGGGTTCTGTGCTTTTGTGAGAGTTGCAAGGGGGTTGAGGTTGTCTCACCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCAGAGTACATTTACATGGATAATGGGAATCGTGGAAGCAACCTCCGTGATGTCATAAATGCCTGCTGCGATTTGCCATTGGAGTCAATGGAGGAAGCCGTCCAAAAACTTCTTGTTGGCTTCACTATGAACAAATCCTCCATCTGTTTGAACTGCCGAGGAGCATGCAAGGGTGTGTCAAAGCTAGTATGTGATTCTTGCATATTAAGCCTCCCTCAAACAGCCACAGTTAGTAGCAAAAAGATTTCACCACTAGTTGAACCAAGATCACCAGAGCCAGTAACGGTTAAAAAATCATTAGACAACGAGATGCAGATAAATTCATTAGAAAATGGGGTGCAGCCAAACTTGTTTAACAATGAGGTGCAGCCAAACTTACTAAATAATGGTGTGCCGCCAAGCTCATTAAACAATGAGATGAAGCCAAATTTGTTAAATAGTGTGATGAAGCCTAATTCATCAAACAGTGTGATGAAGCCAAATTCGTTAAAGAATGGGATGAAGCATAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTACGCTTGCATAAATTGGTATTTGAAGGAGATGTTTTGCCAGATGGAACTGAAGTAGCCTACTATGCTCATGGACAGAAACTGTTGGTTGGTTACAAAAAGGGATATGGTATTTTTTGTACCTGCTGCAACTCTGAGGTCAGTGCTTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCACGAAGAAAGCCTTACCTGCACATTTACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGATCGGAGATTTTCCAACAATGATAATGATGATCTATGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTACCATGCATTCCTATTGGTACTTGGTATTGTAAGTATTGTCAGAATATTTTCCAGAAAGATAGGCAGGGGCAACATAATGTGAATGCTCTGGCAGCTGGAAGGATTGAAGGCACTGATATTTTGGAACAGATGAACCCCAGATGTATTCGTGTTGTCAAAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGTACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGATCATAACATGCAGAACCTTGAGGAATTGCCTGAGGGGAATTGGTTTTGTAGCACAGCTTGCAATCAAATTCATTCTGCTCTGTTGGATTTGGCGGCATGTGGCGAAAAGAGTATCCCAGATTCCCTTCTAACTTTGATAAAAAAGAAACATGAAGAGAAAAGTGTAGACATTGGTGGAGGTGGCCTTGATGTTAAATGGAGGGTTATAAATTGGAAACTAGATGATTCTGTTGAAAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGAGATTTCATTCCGACAATGTTGTTTGGAAGGAACATTCGGGGTCAAGATTTTAGTGGAATGTACTGTGCAGTGCTTACTGTCAATGGAGATATTGTGTGCGCCGGAGTATTTCGTGTGTTTGGGTCAGAAATTGCAGAGCTTCCATTGGTGGCAACAACTTCTGATCAACAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATTGAGACGTTACTTGGATCTTTGAATGTGAAAAACCTTGTCCTGCCAGCTGCTGATGAAGCTGAATCGATATGGACCGGTAAATTTGGGTTTACAAAGCTAGCTCAAGATGAGATAAACAAGTATAAGAAATTTTATCGGATGATGATATTTCAAGGGACCTCGGTGTTACATAAGCCTGTTCCTGCACTATGA 3099 0.4437 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPDPPVQTTSSRKRSRKTVEPKASEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESAAMLACEEETKSDVAMENIISEEEPKVLETVISEEEPKVLETVISEEEPKVLETVISEEEPKVLETVISEEEPKVLDSVVNEEEPVVAETLKEEVVAETLKEEVVDEMAQPLSEINKESEKGVLGGKVPSGETLVLEDNDDKGKKKKRMKKRLERPQTVRRFTRSSLKEKPEETNDEKHVGTVGLDDAIQRESETEASVLMTTPSSGRFSNSRLRKFPTKLKDLLATGILDGLTVRYMKGSKARKNGETGLQGVIQNSGVLCFCESCKGVEVVSPTVFELHAGSANKRPPEYIYMDNGNRGSNLRDVINACCDLPLESMEEAVQKLLVGFTMNKSSICLNCRGACKGVSKLVCDSCILSLPQTATVSSKKISPLVEPRSPEPVTVKKSLDNEMQINSLENGVQPNLFNNEVQPNLLNNGVPPSSLNNEMKPNLLNSVMKPNSSNSVMKPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEGDVLPDGTEVAYYAHGQKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPIGTWYCKYCQNIFQKDRQGQHNVNALAAGRIEGTDILEQMNPRCIRVVKTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCSTACNQIHSALLDLAACGEKSIPDSLLTLIKKKHEEKSVDIGGGGLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLHKPVPAL 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01462 1032 SUPERFAMILY FYVE/PHD zinc finger 754 815 IPR011011 -
Phco10g01462 1032 SUPERFAMILY FYVE/PHD zinc finger 661 716 IPR011011 -
Phco10g01462 1032 MobiDBLite consensus disorder prediction 60 98 - -
Phco10g01462 1032 ProSiteProfiles Zinc finger PHD-type profile. 671 716 IPR019787 -
Phco10g01462 1032 MobiDBLite consensus disorder prediction 543 566 - -
Phco10g01462 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 756 819 IPR013083 -
Phco10g01462 1032 MobiDBLite consensus disorder prediction 259 281 - -
Phco10g01462 1032 PANTHER AUTOIMMUNE REGULATOR 64 1029 - -
Phco10g01462 1032 FunFam PHD finger family protein 859 1028 - -
Phco10g01462 1032 CDD PHD1_AIRE 673 713 - -
Phco10g01462 1032 Gene3D - 859 1027 - -
Phco10g01462 1032 MobiDBLite consensus disorder prediction 543 572 - -
Phco10g01462 1032 Pfam Tify domain binding domain 356 412 IPR032308 -
Phco10g01462 1032 Pfam Tify domain binding domain 607 655 IPR032308 -
Phco10g01462 1032 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 918 1002 IPR016181 -
Phco10g01462 1032 SMART PHD_3 673 714 IPR001965 -
Phco10g01462 1032 SMART PHD_3 761 816 IPR001965 -
Phco10g01462 1032 ProSitePatterns Zinc finger PHD-type signature. 674 713 IPR019786 -
Phco10g01462 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 749 IPR013083 -
Phco10g01462 1032 MobiDBLite consensus disorder prediction 223 281 - -
Phco10g01462 1032 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 660 737 - -
Phco10g01462 1032 MobiDBLite consensus disorder prediction 37 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01462 Phco-Chr10 37295455 37303146 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01462 10 37295455 37303146 Phco10g01462 10 37295455 37303146 ECH
Phco10g01462 10 37295455 37303146 Phco9g00958 9 7798356 7808785 PCT