Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01446 ATGGGGAGCAAGGTCAGCGATCACTACTTGTCCACCGTGAGATCCATCGTGGGTTCAGAATTCTCCGACATGGAAATCATACGAGCCCTCCACATGGCCAAAAACGACGTCAATGCTGCCATCAACATCATTTTTGACACTCACACCGCCACAAGATTCAATCCCACGCCCCCCAACAATCAACGTCCAGTTTCACCTCCAAAACCTTCCCCTTCCACTTCTATCACCGCCAAGCCCAGCTTCAGTGAACAACGCATCGATAATAACAGCGATGATTGGTGGTTTGTGAGTTGCGGGGAAGTGACGGGTTTGTCCACGTGTAAAGGGAGGACTTTAAACACCGGCGAGACGGTGATTTTCAAGTTTCCGATCAAGAAGTTATCCTCGCCCTCCCCGGGGAAGGGGTTTGGACGGGCTGCGGCGTGTTCGGATATAGTTCGTTTCTCCACTGAACAAGCTGGGGAGATTGGTAGAATACCGAACGAATGGGCTCGCTGTCTTTTGCCTCTCGTGAGGGATCATAAGGTTAGGATCGAGGGGAAGTGCAAATTTGCTCCTCAAGTTTTGGGCATCATGGACTCCATTATTTTGTCAGTGAGTGTATTTATCAATAGTTCAATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCGACTGATGAATCAGTGTTTCATCCACTACCAATACTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAAAAGGCAGAGTTAACTCCAGGCGATTTCTATTCCAACAAGCGTTCTCTCAGTGAAAGGGTAACATTACCACGTGCCAAGTTTGAGCACCCTTCTCAAAATGGTGATGAGAATGACAATGAGGATTCTATTTCTGAAATTGAGGTTGAGAATATTGTTGGTGTTGGATCAAGCGCAGAGTTAGAGGAAATGGAACCCCCGGCTAATCTTCAGTGCAATCTACGGCCTTATCAAAAGCAGGCGCTTTATTGGATGATCCAGATGGAGAAGGGACAATGCATGGATGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCGCCTGGTTGACAAGAGGGAGCTTATTGTTTACTTGAATGCATTTTCTGGTGAAGCTACAATTGAATTTCCCAGCACCCTTCAAATGTCCAGAGGAGGAATTTTGGCGGATGCTATGGGCCTTGGAAAGACTATCATGACCATATCCCTTCTAGTTGCCCATTCACGAAAGGGTGAATCAGTAAGCAATCAACCCCTAACCAAGTCCTTGGCTGAAGGAGGTGAAGTTAGTGATACTGTGCATACTTTTTCAAACATACCCAAGAAAGCAACCAAATTTTCTGGTTTTGATAAACCAACGAAGCAAAAGAATTCTCTAACAAGCGGTGGCAACTTGATAATATGTCCAATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTTGCTCAGAGTGATATTGTAATTACTACATATGGAATTTTGTCCTCTGAATTTTCAAGCGAGAATGCAGATGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAGTTTCTGTTGCAGCTGCGGCTCTAAGTGCTGACAGACGTTGGTGTCTAACAGGCACCCCAATTCAGAACAGCCTTGAGGATATCTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTCAAGTTAGTTCAATCAATTTTGAAGCCAATTATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCCATTTTAGTTCTGCCTCCAGCTGATATGCAGATAATTTACTGTGAACAGACAGAAGCTGAAAAGGACTTTTATGGAGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTCGTTGAGCAAGGACGTGTTCTTCATAATTACGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATACTTCAGATGGTGAAGTAAAAGAGGCACCTTCACTGGCGTATGTTCAAGAAGTCGTGGAAGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACGCCTTGTGCTCACCGATTATGCCGGGAATGCCTCCTGGCAAGTTTGCGAAATGCTACTTCTGGCCTATGTCCTGTTTGTAGGAAAGCAGTCAGCAGGCAGGATCTAATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCGTGCAAGGTAACTGCTCTTTTGAATGAACTTAAAAACCTTTGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTGGACCTCTTGCAGATCCCCTTCACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTCTGAATCTGCGGCAGCGGGAGAAAGTAATCAAGCAATTTTCAGAGGACAGCACCACTCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGTCCATTACACGGTTTATTGTGAAGGGGACCGTTGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTACGAAGTGCACGAATTGAGGAGTTAAAGATGCTTTTTACTTAG 3000 0.4463 MGSKVSDHYLSTVRSIVGSEFSDMEIIRALHMAKNDVNAAINIIFDTHTATRFNPTPPNNQRPVSPPKPSPSTSITAKPSFSEQRIDNNSDDWWFVSCGEVTGLSTCKGRTLNTGETVIFKFPIKKLSSPSPGKGFGRAAACSDIVRFSTEQAGEIGRIPNEWARCLLPLVRDHKVRIEGKCKFAPQVLGIMDSIILSVSVFINSSMFGKHHQVSLKDAANSTDESVFHPLPILFRLLGLNPFKKAELTPGDFYSNKRSLSERVTLPRAKFEHPSQNGDENDNEDSISEIEVENIVGVGSSAELEEMEPPANLQCNLRPYQKQALYWMIQMEKGQCMDETATTLHPCWEAYRLVDKRELIVYLNAFSGEATIEFPSTLQMSRGGILADAMGLGKTIMTISLLVAHSRKGESVSNQPLTKSLAEGGEVSDTVHTFSNIPKKATKFSGFDKPTKQKNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQSDIVITTYGILSSEFSSENADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALSADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEQTEAEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLSKLAKRFLRGTYNTSDGEVKEAPSLAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASLRNATSGLCPVCRKAVSRQDLITAPTENRFQVDIEKNWVESCKVTALLNELKNLCSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNLRQREKVIKQFSEDSTTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVSITRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01446 999 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 87 999 - -
Phco10g01446 999 Gene3D - 646 762 IPR027417 -
Phco10g01446 999 Pfam HIRAN domain 100 199 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phco10g01446 999 MobiDBLite consensus disorder prediction 52 85 - -
Phco10g01446 999 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 592 IPR014001 -
Phco10g01446 999 CDD DEXDc_SHPRH-like 317 630 - -
Phco10g01446 999 MobiDBLite consensus disorder prediction 266 288 - -
Phco10g01446 999 MobiDBLite consensus disorder prediction 59 73 - -
Phco10g01446 999 ProSitePatterns Zinc finger RING-type signature. 779 788 IPR017907 -
Phco10g01446 999 Gene3D - 430 631 IPR038718 -
Phco10g01446 999 Gene3D - 373 421 IPR038718 -
Phco10g01446 999 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 834 999 IPR001650 -
Phco10g01446 999 Pfam Helicase conserved C-terminal domain 835 946 IPR001650 -
Phco10g01446 999 MobiDBLite consensus disorder prediction 266 280 - -
Phco10g01446 999 SMART helicmild6 863 946 IPR001650 -
Phco10g01446 999 SMART ring_2 764 803 IPR001841 -
Phco10g01446 999 ProSiteProfiles Zinc finger RING-type profile. 764 804 IPR001841 -
Phco10g01446 999 FunFam DNA repair protein RAD5B 372 631 - -
Phco10g01446 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 993 IPR027417 -
Phco10g01446 999 CDD SF2_C_SNF 830 957 - -
Phco10g01446 999 SMART ultradead3 313 614 IPR014001 -
Phco10g01446 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 763 812 IPR013083 -
Phco10g01446 999 Pfam SNF2-related domain 320 708 IPR000330 GO:0005524|GO:0140658
Phco10g01446 999 SMART HIRAN_2 96 203 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phco10g01446 999 SUPERFAMILY RING/U-box 753 810 - -
Phco10g01446 999 Gene3D - 813 997 IPR027417 -
Phco10g01446 999 Pfam Zinc finger, C3HC4 type (RING finger) 761 808 - -
Phco10g01446 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 630 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01446 Phco-Chr10 37115399 37123962 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco10g01446 SNF2_N 1.7e-84 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01446 10 37115399 37123962 Phco10g01446 10 37115399 37123962 ECH