Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01410 ATGAGTTTTAGAGAGTGCAATGTAGAGAACAAGAATCTGTGTCTTCAGACCCCAACTTTTATTGAGTGGCTCGAACCATCTTCTTCTCTAACAAGTTCAATATCACCACCAGCTTCTTCCTTGGCTCAGCATGATCAACTTTCCCAAGAAACGATCCAGTTTTTGCCCTTCAAGGAAGACCATGGAGTGAAAAAGGATGGCTTAGAAGTGAAAGAAGAGAAGGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTCACACAGGAGACCCTGACCCTGATGACCATGATGCCAGTGATGGGAAGGTGGTTTTCCATGTAAAGGAAGAAGAACCTTTGAAGAAAAGTTTCCAGGGTTGTTCTTTTAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCATGGATCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGCCCTTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCCGAAAGTGCTCAAAATCATTTGCAGTTAAAGGGGATTGGAGGACTCACGAAAAGAACTGCGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTCAAAGATCATATTAGATCCTTTGGAAAAGGCCACTCCCCACATCCTTCTCATGAAGGCTTCGTTGAGGATGAGAAGGAATGCGTTACTGGATCTGATGAAGATGAAGTTGCTCATACGTGA 924 0.4394 MSFRECNVENKNLCLQTPTFIEWLEPSSSLTSSISPPASSLAQHDQLSQETIQFLPFKEDHGVKKDGLEVKEEKVEQVTVALHIGLPHTGDPDPDDHDASDGKVVFHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFVEDEKECVTGSDEDEVAHT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01410 307 FunFam Zinc finger protein WIP2 197 279 - -
Phco10g01410 307 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Phco10g01410 307 MobiDBLite consensus disorder prediction 276 307 - -
Phco10g01410 307 SUPERFAMILY beta-beta-alpha zinc fingers 214 248 IPR036236 -
Phco10g01410 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Phco10g01410 307 Gene3D Classic Zinc Finger 226 275 - -
Phco10g01410 307 PANTHER ZINC FINGER PROTEIN WIP2 28 294 IPR043584 GO:0003700|GO:0010468
Phco10g01410 307 SUPERFAMILY beta-beta-alpha zinc fingers 113 167 IPR036236 -
Phco10g01410 307 Pfam Zinc finger, C2H2 type 144 163 IPR013087 -
Phco10g01410 307 SMART c2h2final6 144 166 IPR013087 -
Phco10g01410 307 SMART c2h2final6 191 223 IPR013087 -
Phco10g01410 307 SMART c2h2final6 228 248 IPR013087 -
Phco10g01410 307 Gene3D Classic Zinc Finger 143 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01410 Phco-Chr10 36753940 36756973 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g01410 zf-C2H2_6 0.00013 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01410 10 36753940 36756973 Phco10g01410 10 36753940 36756973 ECH
Phco10g01410 10 36753940 36756973 Phco9g01026 9 8748150 8750968 PCT