Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01404 ATGTACCATCATCACCGACACCAAAGAAAAAACATTCATTCTACTTCCAGAATGCCAATCCCCTCTGAGAGGCACAAGTTCCTTCAAACAGGAAATGGGTCTGGAGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACACCAGATCTTCATGCCAGATTCATAGAAGCAGTAAATCAATTAGGGGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTCACCTTATATCATTTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATGACAACAAGTGCAACAACTGGGGAGAGACTTTCTGAAACCAGTGGAACTCACATGAGCAAATTAAGCCTCGGACCGCAGGCTAACAATTATGCTAATTTTCAATGCCTTCTATCCAAAGATTTGCATATAGGCGAGGCACTGCAAATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACATCTGCAGCTTAGGATAGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAGACTCTTGGCAGACAGAATTTGGGAATAATAGGACTTGAAACTGCCAAAGTTCAACTATCAGAGTTGGTGTCCAAAGTCTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTGCAAGGATTTTGCCCTCAGCAAACACATACCAACCAGCCAAACGATTGCTCAATGGACAGTTGCCTCACATCCTGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATAGCCTGAGACACTTCAACAGCCATGTGTTCATGGAACAAAAGGAAAGGACAGATGCTCGCAACAATCTTAGGAACTCTGAACTGAAGTTGTGTGATGATGGAAAAAAGAACACCTTCCTTGCCCCATTGAGCAAAAATGAAGAAAGAAGAAAGTATGCCGCTGAAACCGGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAGCAGAAAATAGAAGCAGCATGTATCCTGAAAGCCTGATCAAAGAAAGCCAATCAGAAGGTGAGTTCCAACACCGAAACAGAATCAAGACAGAAACAATGAAAGCAGCGGCTGAAAAAGTTTGTCAAGATTATAGAATGCCAGCTTCTTACTTTGTAGCAACAAGATTGGACCTAAACAACCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTAGACTTGAATAGATTCAGTTGGAGCTAA 1293 0.4246 MYHHHRHQRKNIHSTSRMPIPSERHKFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKMTTSATTGERLSETSGTHMSKLSLGPQANNYANFQCLLSKDLHIGEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIIGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTHTNQPNDCSMDSCLTSCDRSQKEQEIQNSLRHFNSHVFMEQKERTDARNNLRNSELKLCDDGKKNTFLAPLSKNEERRKYAAETGPGNLSMSIGLEREAENRSSMYPESLIKESQSEGEFQHRNRIKTETMKAAAEKVCQDYRMPASYFVATRLDLNNHGDNEAATTCKQLDLNRFSWS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01404 430 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Phco10g01404 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Phco10g01404 430 MobiDBLite consensus disorder prediction 1 38 - -
Phco10g01404 430 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Phco10g01404 430 Gene3D - 45 103 - -
Phco10g01404 430 FunFam Myb family transcription factor 45 103 - -
Phco10g01404 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Phco10g01404 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 323 IPR044848 GO:0003700
Phco10g01404 430 Pfam MYB-CC type transfactor, LHEQLE motif 157 203 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01404 Phco-Chr10 36658196 36660724 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco10g01404 Myb_DNA-binding 3.8e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01404 10 36658196 36660724 Phco9g01036 9 8890987 8893428 PCT