Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01373 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGCGCCGCGATTCTGGTGAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACGGAACGATGCAGAAGATCTGCTCATCAGGAGATGGCGCTTATTGCTCGAATTCAGCACCCTTACATTGTGGAATTCAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATATTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAGACAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAACTACTCTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTACATCGCGACCTAAAGTGTTCCAATATCTTTCTTACCAAGGATCAAGATGTTCGCCTTGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCGGATATTCCTTATGGATTCAAATCTGACATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCGGCTTTTAAAGCTTTTGATATGGCAGGTTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTCTGCCTCCCTGCTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGGAAAAATCCTGAGCATCGTCCAACAGCATCTGAAGTCTTAAAGCATCCTTATTTGTTACCTTATGTTGATCAATATCGTTCATCTTTCTGTACTCCAACAGCCAGTTCTCCTGAAAAGACAATTTCTGTTGTTCATCATCCTCGAAAAAATAAGCCAGAAGGTCAAAACAGTAGTAGTTCAAGTACCGAGAAAGATAGTTTGATGTCAAATGTGAAAAACACTGCAAATGCAGTGCAGAAGTGTGATGGCAAAAGTACTGAACTAGACATGACCCCAATTGAGGATGATGGCTCTGAGCAACTTGTGCCTGATGAAGAAGGAAATGGCTCTATCAAAGTCAATGCCAAAACTGTTGATCAAGTGGTGACAAAGCAGTTTAATAATGAACACAATTCTAGTGTTGTATCTAAGCAACCAATAGCAATTAAGAACGTAGTGACAGCATTAAGAAATAGAAAACTTAGAGAGACAAGTTCTCCAATAAGGGGCAATAGCATAAAGGGTGGTGGTGTGTTGACGCATAAAATAAATACAGAGACATTGTCCAAATTGCCCAAACCCAATTTTGGTGCTTGTGATTTGAAGCCGAATTTGGAGTTGCCAACTATTGCACCTTCAAAAGCAACTCCTGATCCTGCGAAAAGATTGCAAGGATCACATACATCAAAGCATCAGTTACCAATGATTGAATCCACACCAAAAACTAAACCTCGACATACTGTGATTCCACCACTGGGTCCTTCCAAGCAAGTAGAAGGTCGTGAAGTTCCTGCTAAGCCAAGGCAAAAGACTCCTCCAAGCTTACTTAAGCCACCTTCTTTTCCAGGACATGTGAGACAGGCTGGGTTTGATGTTCCAAATGCAGCAAATTATACTGGAAAGTCAAGTCCAAACAAAATGGTTCGGGAGCCTAACATAAGCCATAACCAGTTGACCAATAGTCTTCTACCACACATTTCTAGAGAGATTACTCGAGAGCCTTTAAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCTTTCTCTATTCAAGGATTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAAACAACACTTCATGTTCAAGAGAGTTTAAACCACGCTGAAAATGTGGAATCACGAGCAGATAGCAGTTCACCTGCATCCTATTCGCATTTTGAGATGTCTGAACAATTGTCTGAGGAAACCCCTGTCATTACGCCAAACTTTCAGAAGATAATGACTAGTGACGAGAAAGTATGTCCCAGTTTATCTCCAGATCATTCAGTTCAAGATGCTGAGGTAATGTTTGCTTCTGATGATAGTTTTCCCATAAATCAGATGATCGTATCTACTGGCTCCAGGTGTGATAATACATCTGTAGAATCCTCTGCTGAAATCACTGAAGGAATAGAAGATGTTGAAGATATTTCTAAGGAGATGTCTTCAACCAATTCTCCTCAACAACCAGTCCCCATTTCTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCAGCAAGCAAGCCAAATAATATGCTTGATAGAGTTAGCCAGCCAAAACTTATGTGCCTCTCCAGTGATGACAAATTTATGGTGAGGGGAAGACTGTCATCAGCAGAAGAAACTGCTCCTTTGATTATTTCTACTAAAATTTCAAGCCAGAAAGTTTTACAAGAGGAGAAAGGAACTGTTCTGGCACCAGAAAGGCCAGCTGTTGGCCATTTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGTGTGGGGAGTGAGCAGCCAGTGAAGGAATCCATGGACATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAACATTATAAGGGATGATATAGAAATGAGAAACGTGAGCACTCCTTTGACCCTAAAATCTTCTAATTGCTCAGAAGCTATTGGCAAGTCAAATATTTCTGAAAATATGGAAATTAGAAACTTGAGTAATCCTCCTAACTTAAAATCTTCAAGTTGCATCGACTCCTTGAGCATGAAATCAAGTTTTTCTGATCATCCTGGTGTTAGGGAACAAGATGTGGAAAATCATGGTTCTCTTGTTGCAAAATCTGATTCTCCTGAGTATTCCGGATACACTCCTACAGCTGAAGTGGAACCACCAGCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCCCTTGAAGGACTGTTAGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCTTTTGGAAAAGATAAAGTTTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTTTAAAAGGATTGATGATTGACGAAAGTGGAGGGCGCAGTTAA 3120 0.4154 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKTNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLLPYVDQYRSSFCTPTASSPEKTISVVHHPRKNKPEGQNSSSSSTEKDSLMSNVKNTANAVQKCDGKSTELDMTPIEDDGSEQLVPDEEGNGSIKVNAKTVDQVVTKQFNNEHNSSVVSKQPIAIKNVVTALRNRKLRETSSPIRGNSIKGGGVLTHKINTETLSKLPKPNFGACDLKPNLELPTIAPSKATPDPAKRLQGSHTSKHQLPMIESTPKTKPRHTVIPPLGPSKQVEGREVPAKPRQKTPPSLLKPPSFPGHVRQAGFDVPNAANYTGKSSPNKMVREPNISHNQLTNSLLPHISREITREPLKTFESSSKGMQTDSSNSVSSSFSIQGFELSDFATTFIDLSETTLHVQESLNHAENVESRADSSSPASYSHFEMSEQLSEETPVITPNFQKIMTSDEKVCPSLSPDHSVQDAEVMFASDDSFPINQMIVSTGSRCDNTSVESSAEITEGIEDVEDISKEMSSTNSPQQPVPISGEKSVCEEFGPASKPNNMLDRVSQPKLMCLSSDDKFMVRGRLSSAEETAPLIISTKISSQKVLQEEKGTVLAPERPAVGHFPPAFDDVIHVIRHSSYRVGSEQPVKESMDMGVQNVDVGKFINIIRDDIEMRNVSTPLTLKSSNCSEAIGKSNISENMEIRNLSNPPNLKSSSCIDSLSMKSSFSDHPGVREQDVENHGSLVAKSDSPEYSGYTPTAEVEPPAKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIDESGGRS 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01373 1039 SUPERFAMILY Protein kinase-like (PK-like) 4 312 IPR011009 -
Phco10g01373 1039 MobiDBLite consensus disorder prediction 459 473 - -
Phco10g01373 1039 MobiDBLite consensus disorder prediction 927 961 - -
Phco10g01373 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Phco10g01373 1039 MobiDBLite consensus disorder prediction 297 325 - -
Phco10g01373 1039 Gene3D Transferase(Phosphotransferase) domain 1 90 335 - -
Phco10g01373 1039 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Phco10g01373 1039 MobiDBLite consensus disorder prediction 277 344 - -
Phco10g01373 1039 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Phco10g01373 1039 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01373 1039 CDD STKc_Nek 7 262 - -
Phco10g01373 1039 MobiDBLite consensus disorder prediction 447 517 - -
Phco10g01373 1039 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Phco10g01373 1039 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01373 1039 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01373 1039 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 988 - -
Phco10g01373 1039 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01373 Phco-Chr10 36335873 36343050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phco10g01373 Pkinase 1.4e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01373 10 36335873 36343050 Phco10g01373 10 36335873 36343050 ECH
Phco10g01373 10 36335873 36343050 Phco9g01088 9 9661159 9667410 PCT