Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01363 ATGGCAACGTACTTTCATGGAAGCACTTCGGAGATTCAATCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCGTCTTACGTACCTTATGCTGACGCGCCGCACCACCCAACACTTCTCGTCAATCCCAACGCCAACAACGCGCTCAACCTCGCGAGTCTCACCCACGCGCCTCCGGTATCACCTGCCGCCAACCACCACCAGCACGTTATTCACGGGGTGTCAAACGTCCTTGGATCCGGAAATTCCGATGAACACGCTCACACCCGACAGTCTTTGTTGGGGGAAAATATCGCCGCCTTCCACGGATTCTCCGGCGGAGCCTCCTCCGCCGCCCCTCGCGTTCACTATAACCTCTGGGGTTCGGGGGTTGATCAACCTGGAACGCCTTCTAGCAGCTCCGGCGGCGGCGGTTTCCGGCGGCCCAGTCAGCAGGGGTTGTCTCTCAGCCTTTCCTCACAGCAAACAAATTTCAGGTCAGTTTCTGGCGAGCTTGAGATTGCCGGACAGGGCCACGTCGCCGGAACTGGGAACTCGCCGACATCAGCTGCGTCGACAGGAGTTTCCGGCCTGATTTTGGGGTCGAAGTATCTGAAAGCGACGCAGGAGCTTCTGGATGAAGTTGTTAGCGTAGGAAAAGGAATCTACAAAGACGAAAAGTTCTCAGAGAAGGTGAAAGCGAATAAAGAATCTACTAATTCTGGTGCTGGTGCTGGTGCTGGTTCAAGTGGTGGAGGCGAAAACAGTGCAGGGAAGCAAATGGTTGAACTCAGCACCGCCCAGAGGCAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCAACATGCTCGATGAGGTGGAACAAAGGTACAGGCAATATCACCACCAAATGCAAATTGTGGTATCATCATTTGAGCAAGCTGCGGGTTATGGGGCGGCAAAATCTTACACTGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGGTGCCTGAAAGATGCAATCTCTGCGCAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGCTTAGGAGTGAAAGTAGAAGGGTCAAGGCTAAGGTATGTTGACCACCACCTTAGGCAACAAAGGGCACTGCAGCAGCTAGGAATGATTCAACCCAATGCATGGAGGCCACAAAGAGGCCTTCCAGAACGAGCCGTTTCCATTCTTCGAGCTTGGCTTTTTGAGCATTTTCTTCACCCCTATCCAAAGGACTCGGATAAAGCCATGCTTGCTAAACAAACTGGACTGGCTAGAAGCCAGGTGTCAAACTGGTTTATCAATGCCCGGGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACCTGGAAGAAATGAAGGATCATGAACAAGCGAACGGCTCAGAAAACACCAGATCAAAAGAATTGAGCAAGGAATTGGGGTCAACAGCAAATGTTGCACCAGAATCAGGAGCCATTAAACTTGATAATCTTCAATCAAAACAAGATAGCTTCAACAACCAAAACACTTCTCCAACTGAAATCTCAACAAACTCTTCAATGTCTCCCATGGGAGGGTCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGATCATCTGACGTGCAAAGGAGTCCAAACAAACCAAGAAGTTCGGAAATGCAAAACTCTCCAAGTAGCATCCTCTCAGTGGACATGGAAATGAAGCATAATGGTGAACATGCAAATACTAGAGAAGCCAACACAAAGTTTGGCATTGAAAGACACCACAAAGATGGATACCCTTTGATGAGTGGCAATACAAACCATGGTGGGGGTTTTGGAGCGTTCGCCATGGAAGACATTGGAAACAGATTCAACGTCAGTACTGAGCAATTGGCTTCAAGGTTCCATGGAAATGGTGTTTCTCTGACACTAGGTCTTCCCCACAATGAAAACCTTTCTATCTCAGGAACTCAGCATGGATTTCTCTCACAGAATATTCATCTGGGAAGGAGACTTGAGATGGGAACGAGTGGGAATGAATTTTGTGCTATCAACACTCCACCTTCATCTCACTCAGGAACAACTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGTTGCTCAGTTATTACCTGATTTCGTGGCCTAA 2112 0.4858 MATYFHGSTSEIQSSADGLQTLYLMNPSYVPYADAPHHPTLLVNPNANNALNLASLTHAPPVSPAANHHQHVIHGVSNVLGSGNSDEHAHTRQSLLGENIAAFHGFSGGASSAAPRVHYNLWGSGVDQPGTPSSSSGGGGFRRPSQQGLSLSLSSQQTNFRSVSGELEIAGQGHVAGTGNSPTSAASTGVSGLILGSKYLKATQELLDEVVSVGKGIYKDEKFSEKVKANKESTNSGAGAGAGSSGGGENSAGKQMVELSTAQRQELQMKKSKLVNMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKAMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQANGSENTRSKELSKELGSTANVAPESGAIKLDNLQSKQDSFNNQNTSPTEISTNSSMSPMGGSLQSHSGFHLAGSSDVQRSPNKPRSSEMQNSPSSILSVDMEMKHNGEHANTREANTKFGIERHHKDGYPLMSGNTNHGGGFGAFAMEDIGNRFNVSTEQLASRFHGNGVSLTLGLPHNENLSISGTQHGFLSQNIHLGRRLEMGTSGNEFCAINTPPSSHSGTTYESIDIQNRKRFVAQLLPDFVA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01363 703 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Phco10g01363 703 SMART prehox3 188 332 IPR006563 -
Phco10g01363 703 Pfam Associated with HOX 194 331 IPR006563 -
Phco10g01363 703 MobiDBLite consensus disorder prediction 452 479 - -
Phco10g01363 703 Gene3D - 383 462 - -
Phco10g01363 703 MobiDBLite consensus disorder prediction 493 550 - -
Phco10g01363 703 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 127 463 - -
Phco10g01363 703 SUPERFAMILY Homeodomain-like 381 447 IPR009057 -
Phco10g01363 703 MobiDBLite consensus disorder prediction 126 150 - -
Phco10g01363 703 MobiDBLite consensus disorder prediction 228 254 - -
Phco10g01363 703 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Phco10g01363 703 MobiDBLite consensus disorder prediction 124 150 - -
Phco10g01363 703 MobiDBLite consensus disorder prediction 452 467 - -
Phco10g01363 703 SMART HOX_1 380 444 IPR001356 GO:0003677
Phco10g01363 703 FunFam BEL1-like homeodomain protein 9 383 445 - -
Phco10g01363 703 Coils Coil 264 291 - -
Phco10g01363 703 CDD homeodomain 380 441 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01363 Phco-Chr10 36171738 36175524 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco10g01363 POX 5.4e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01363 10 36171738 36175524 Phco10g01363 10 36171738 36175524 ECH