Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01347 ATGTCAATGGAAATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACAGTTAGATGTGGACACTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGAAACTCAGCATTTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTGGGATCATCATCAAAATGCAAATCATTTGAGTCCGACCATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCTGCTTATAACCGATTCATTAAAGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCTTTTAGCACGGCTGCAAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGAGATGGTACTCAAAAGTCTAACGGATTTTACTGA 558 0.4319 MSMEMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQETQHFSTVAKLQRQHLSVQEACSKELGSSSKCKSFESDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01347 185 SUPERFAMILY HMG-box 107 155 IPR036910 -
Phco10g01347 185 MobiDBLite consensus disorder prediction 94 117 - -
Phco10g01347 185 MobiDBLite consensus disorder prediction 94 111 - -
Phco10g01347 185 Pfam YABBY protein 7 162 IPR006780 GO:0007275
Phco10g01347 185 Gene3D High mobility group box domain 98 158 IPR036910 -
Phco10g01347 185 CDD HMG-box_SF 116 152 - -
Phco10g01347 185 FunFam Axial regulator YABBY 107 176 - -
Phco10g01347 185 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01347 Phco-Chr10 35984204 35992056 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phco10g01347 YABBY 5.6e-72 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01347 10 35984204 35992056 Phco9g01111 9 10158275 10164261 PCT