Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01332 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCCCCACAAACCAGTAGTTCTCAACTCTTTCCCAGAAGACAACAATACCATCAACAACAGCAGTGGCCAACACAAGTGGAAACTCGGTCCCAACATGGATGTCACAGTTACCAGAAACAGGTCTCCATCATCTTCTCCAAACACAAACACAAACACCAACACCACCTCCACCTCCACCTCCACCATCCCCTTCCAAGTCAACCATACCTCTGATAACAAAAGGCCCCACATCGATGAGATGGACTTCTTCCCTAACAAGACCGATGATGATCATAACAACGGCATAAACAACTTTGCCTCTGCCTCCACCTCTGCACCTCCCTCACTTGACCACCTTCTTCACACACATGATCATTCATCCACTCCTGCTATCTTGGAATTGAAAGTAAACACTGGTTTGAATCTTCTCACCACCAACACTGGTAGTGATCATTCCATGGTGGACGATGAGACATCTACTAATTCAGAAGAAAAAAGAGCCAAGAGTGAGATGGTTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATAAGCTGAGGAACATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCAGATGCATTTGGTGAGTTTGATGCAAGAACAAAAGGAGGAGGAGGGTGAGCAACAAGTGTTTGATGGAAAATTAGATGAGGAAAAACAAAGTGGGAATGGGGCCTTGGTGCCAAGACAATTTATGGATCTTGGGTTGGCTAGTAATGCTGACAATAATGAACCTTCCCATTCTTCCTCGGTGGGAAGAAGTCAGGATCTGTCAAAGTCGCCAATAAATAATGAGGTAGCATCCAAGGAATTTGACACCAAGAAGAATGGGAGTGTTAGTGATGAAGGATTTGATCAAGACAAGAAGGAATTCGGAAGGGGAATTGAAAGAGAAGATAGTCCCTCAGAAGGGATTGCTGCTAATAGCAATGTTCCAAAGTTTAGTCCTCCAAGAAACGTTGATCAAGCTGAAGCTACCATGAGAAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCAATGATCACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAAATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAGCAGGTGCAAAGGTGTGCTGAAGACCGAACAATACTGATCACAACATATGAAGGAAATCACAACCACCCTTTGCCTCCAGCAGCCCTGGCAATGGCACAAACCACTTCCTCAGCAGCTAGAATGCTGCTTTCAGGATCCATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTCCCTTGCTCTTCTAGCATGGCCACTATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGATTTGACTCAGTCTCCAAACCCACTACAGTTCCCCAAGCCACCAAACCAATTCCAAATCCCCTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCCTCAGCCTCATTGCTGCCTCAGATATTCGGCCAGGCACTGTACAACCAGTCCAAGTTTTCTGGCCTCCAAATGTCTCAAGATGCAGACCCTTCCCCACTGAGTAATCAATCTCAACGGCCACCACCACACCTTGCTGACACTGTTAGTGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACAGCAGCTTTGGCAGCAGCAATCACTTCTATTATTGGGGGTGCACAGCCAAGCAACAGTACCAGTACCAATAATAATGGCACCACATCCAACAACACCAGCAATGCCAATGTTACATCAAACAACAACAAATAA 1872 0.4637 MARGGGLSIDSDPIGSFFPHKPVVLNSFPEDNNTINNSSGQHKWKLGPNMDVTVTRNRSPSSSPNTNTNTNTTSTSTSTIPFQVNHTSDNKRPHIDEMDFFPNKTDDDHNNGINNFASASTSAPPSLDHLLHTHDHSSTPAILELKVNTGLNLLTTNTGSDHSMVDDETSTNSEEKRAKSEMVVLQAELERMKVENHKLRNMLDQVNTNYNALQMHLVSLMQEQKEEEGEQQVFDGKLDEEKQSGNGALVPRQFMDLGLASNADNNEPSHSSSVGRSQDLSKSPINNEVASKEFDTKKNGSVSDEGFDQDKKEFGRGIEREDSPSEGIAANSNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAALAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPNQFQIPFPGVPQNFANSSASLLPQIFGQALYNQSKFSGLQMSQDADPSPLSNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGGAQPSNSTSTNNNGTTSNNTSNANVTSNNNK 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01332 623 Coils Coil 175 223 - -
Phco10g01332 623 MobiDBLite consensus disorder prediction 540 561 - -
Phco10g01332 623 SUPERFAMILY WRKY DNA-binding domain 359 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco10g01332 623 MobiDBLite consensus disorder prediction 291 323 - -
Phco10g01332 623 MobiDBLite consensus disorder prediction 158 180 - -
Phco10g01332 623 MobiDBLite consensus disorder prediction 593 623 - -
Phco10g01332 623 SMART WRKY_cls 366 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco10g01332 623 MobiDBLite consensus disorder prediction 29 94 - -
Phco10g01332 623 MobiDBLite consensus disorder prediction 540 565 - -
Phco10g01332 623 MobiDBLite consensus disorder prediction 29 44 - -
Phco10g01332 623 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 153 607 IPR044810 GO:0003700
Phco10g01332 623 MobiDBLite consensus disorder prediction 259 341 - -
Phco10g01332 623 MobiDBLite consensus disorder prediction 259 290 - -
Phco10g01332 623 ProSiteProfiles WRKY domain profile. 361 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco10g01332 623 FunFam probable WRKY transcription factor 31 351 428 - -
Phco10g01332 623 Pfam WRKY DNA -binding domain 368 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco10g01332 623 MobiDBLite consensus disorder prediction 52 88 - -
Phco10g01332 623 Gene3D WRKY domain 351 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01332 Phco-Chr10 35804334 35806971 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco10g01332 WRKY 3.4e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01332 10 35804334 35806971 Phco11g00828 11 6096068 6098421 ECH
Phco10g01332 10 35804334 35806971 Phco10g01332 10 35804334 35806971 ECH
Phco10g01332 10 35804334 35806971 Phco9g01126 9 10406197 10409081 PCT