Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01330 ATGGAGTGGACCAGAGGCTTCATCATAGGACGTGGCTCATCAGCCACCGTCTACACTGCCGCCTCCTCCCACTCCTCCACTGTTGCCGCCGTCAAGACTGCAGAGTTATCACCATCAAACTCAGAAAAGTTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCACATAGTTACCTACAAAGGTTGTAACACCACAGAGGAAAGCAACACCCTATGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAACTCTCTCTCAAGAAATTCGTCGGCAAGGTGGCCGGCTCAGCGCGCCGACAATCGTGCACTACGTTCGACAAGTCCTCCAGGGGCTGGAGTACTTGCATAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGTGAAGATGGAGCAAAGATTGGGGATTTTGGATGTGCAAAGTTGTTGAATGAGTCTCCGGTGGCGGCGATCGGAGGCACGCCAATGTTCATGGCCCCAGAGGTGGCGCGTGGGGAGGAGCAGGGGTACCCTGCTGATGTGTGGGCGCTTGGGTGCACTGTGGTTGAAATGGCCACTGGGTTTGCGCCGTGGCCTAATTTAGAAGACCCTGTCACTGTGCTGTACCGTGTTGCATATTCCAATGAGGTTCCTGAGATTCCAAGCTTTCTGTCTGAAGAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGGAGGAATCCTAAAGAAAGGTGGAGTTGTAGTGAGCTTCTGAAGCATCCGTTTCTTGGGGAATTCAGTTCCAGTGATAAGGAAATTCAGCAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGGGCTTTTGGAATTCTGTGGAAGAGGCAGATTCAGAGGCAGGGTGTGCCTCTGACCCTGGCAATGTGGTTCAGAGTAGAAGTTCGGATGAGTCTCCCAAGGGTAGGATCAGAAGGCTAGCTTCGTGTTCAGAGGATCCAATTTGGGAATTGGATGATGAAAATTGGATCACAACTAGGGGTAGTGAAGCAGGGGCTTCAAGTTGTGAAGGGTTGGATTTGGATGTTAATATTAGAATTAGTGATTATTTTTGTGATGATTATTATAAATGTAGTGATGTTAGCGTTGTAGTTGATAGTTTCAATTTTGAGGGAGGCATAGGTGAGATGGTTCTCCCTTCAACATTTGAGTTTTTATAA 1197 0.472 MEWTRGFIIGRGSSATVYTAASSHSSTVAAVKTAELSPSNSEKLQREQRILSSLFSPHIVTYKGCNTTEESNTLWFNLFMEYMPFGTLSQEIRRQGGRLSAPTIVHYVRQVLQGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKLLNESPVAAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNEVPEIPSFLSEEAKDFLGKCFRRNPKERWSCSELLKHPFLGEFSSSDKEIQQSNSCSPTSILEQGFWNSVEEADSEAGCASDPGNVVQSRSSDESPKGRIRRLASCSEDPIWELDDENWITTRGSEAGASSCEGLDLDVNIRISDYFCDDYYKCSDVSVVVDSFNFEGGIGEMVLPSTFEFL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01330 398 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01330 398 FunFam Mitogen-activated protein kinase kinase kinase 17 2 315 - -
Phco10g01330 398 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Phco10g01330 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Phco10g01330 398 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01330 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 296 - -
Phco10g01330 398 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01330 398 MobiDBLite consensus disorder prediction 292 315 - -
Phco10g01330 398 CDD STKc_MAPKKK 2 256 - -
Phco10g01330 398 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Phco10g01330 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01330 Phco-Chr10 35784050 35785246 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Phco10g01330 Pkinase 2.6e-59 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01330 10 35784050 35785246 Phco11g00826 11 6074939 6076267 ECH
Phco10g01330 10 35784050 35785246 Phco10g01330 10 35784050 35785246 ECH
Phco10g01330 10 35784050 35785246 Phco8g02506 8 29102211 29103456 ECH
Phco10g01330 10 35784050 35785246 Phco9g01127 9 10438778 10439842 PCT