Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01310 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATTGGAAGAAACGGCAACGTTGTTGGCTTTGGATTATCTTCAGGACTCTCTCTTGGCCAGATTGAAAACCATAAGGCCTCGGAATCTCAAAGATCTGTAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAGCTTCTCCCCCTGGACATGCCTCAGAACACTTCAGAGAGCGATGTCCCAAGAATCCGCGAAGATGACTTTGACAGTGCCACCAAGTCAGGAAGTGAAAACCAAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAACGATACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAAGCATTCTTTAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAAGAGCTGAGTAGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAGATAAAGACTCAACATGAGCGCCATGAGAACACACAGCTCCGAACTGAAAACGATAAGCTTCGAGCTGATAACATGAGATTCAGGGAAGCTCTCAGCAATGCCTCGTGTCCTAACTGTGGAGGACCAACCGCTATAGGGGAAATGTCATTCGACGAACATCACTTGAGGCTCGAAAATGCACGCCTCAGAGAAGAGATTGATAGGATTTCTGGCATTGCTGCAAAGTACGTGGGGAAGCCTGTGGTGAGCTATCCACTTCTTTCTCCTTCATCTGTTCCTCCACGTCCACTTGAGCTTGGGATTGGAGGTGGTTTTGGTGGCCAGTCTGCGGGCATTGGTGGAGACATGTTTGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATCAGTGGACCTACTGAGGCTGATAAGCCCATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCACAGATGGGTGATCCTCTTTGGTTGACTACCCTGGATGGCACTACCACTGTGCTCAACGAGGATGAATACATAAGGTCTTTTCCTCGGGGAATTGGTCCTAAACCTGCTGGTTTCAAGTGTGAAGCTTCACGGGAAAATGCTGTTGTTATCATGAACCATGTTAGCCTTGTTGAGATTCTCATGGACGTGAATCAATGGTCCACAGTGTTCTCTGGCATAGTCTCAAGAGCAATGACGTTGGAGGTGTTATCAACAGGGGTGGCGGGGAATTACAACGGTGCATTGCAAGTGATGACAGCAGAAGTACAAGTACCTTCACCTCTAGTGCCAACTAGAGAGAGCTATTTTGTAAGATATTGTAAGCAGCATGGTGACGGGACTTGGGCTGTAGTGGACGTGTCCCTGGATAATTTGCGTCCTAGTCCCTCAGCCAGATGTAGAAGAAGGCCTTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATTTGGGTTGAGCATGTTGAAGTGGATGACAGAGGTGTTCACAATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCCACCTTGGATCGACAATGTGAAAGGCTTGCTTGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGAAGGAAGAGTATGCTGAAACTGGCAGAGAGAATGGTCATAAGCTTTTGCGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTCTCTGGAACTGGAGCTGATGATGTAAGGGTCATGACACGTAAGAGTGTAGATGACCCAGGAAGGCCTCCTGGCATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTCCCAGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAATGGAGGAGTTGTCCAGGAAATGGCACACATTGCCAATGGACGAGAAACTGGAAATTGTGTCTCTCTACTTCGAGTGAATAGTGCGAATTCAAGCCAGAGTAACATGTTGATATTGCAAGAGAGTTGCGCAGACTCAACAGGGTCATTTGTGATCTATGCTCCAGTAGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCTGACTACGTGGCCCTTCTTCCTTCAGGATTTGCTATTCTCCCAGATGGGACCACTGCACATGGAGGAAGCATTGGTGACACTGGAAATGGTGGATCTCTTTTGACTGTGGCCTTCCAAATCTTGGTTGATTCAGTTCCAACAGCAAAGCTCTCTCTTGGATCTGTTGCCACTGTTAACAACCTGATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGA 2349 0.4747 MPAGIMIPARNMPSMIGRNGNVVGFGLSSGLSLGQIENHKASESQRSVEMFQPNLMEAGQLLPLDMPQNTSESDVPRIREDDFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIKTQHERHENTQLRTENDKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISGIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGGFGGQSAGIGGDMFGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRENAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEVQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLACAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRETGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGSIGDTGNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01310 782 FunFam Homeobox-leucine zipper protein GLABRA 2 303 522 - -
Phco10g01310 782 SUPERFAMILY Bet v1-like 294 524 - -
Phco10g01310 782 Gene3D - 94 182 - -
Phco10g01310 782 SMART START_1 303 523 IPR002913 GO:0008289
Phco10g01310 782 FunFam Homeobox-leucine zipper protein HDG1 95 182 - -
Phco10g01310 782 Gene3D - 358 520 IPR023393 -
Phco10g01310 782 SUPERFAMILY Bet v1-like 543 774 - -
Phco10g01310 782 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 107 777 IPR042160 -
Phco10g01310 782 CDD START_ArGLABRA2_like 298 522 - -
Phco10g01310 782 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Phco10g01310 782 ProSiteProfiles START domain profile. 294 526 IPR002913 GO:0008289
Phco10g01310 782 Coils Coil 172 192 - -
Phco10g01310 782 Pfam START domain 304 523 IPR002913 GO:0008289
Phco10g01310 782 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Phco10g01310 782 CDD homeodomain 109 167 IPR001356 GO:0003677
Phco10g01310 782 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Phco10g01310 782 SMART HOX_1 107 170 IPR001356 GO:0003677
Phco10g01310 782 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Phco10g01310 782 MobiDBLite consensus disorder prediction 82 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01310 Phco-Chr10 35448891 35454456 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco10g01310 START 2.2e-57 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01310 10 35448891 35454456 Phco10g01310 10 35448891 35454456 ECH
Phco10g01310 10 35448891 35454456 Phco9g01168 9 11013859 11018781 PCT