Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01300 ATGGAACCCATTTGCCCTATTGGGTTGCCGTGTGCCTCTGAAATCTCTGCTCTCTTCTCTCCTCCCTCACCACTTCAAATACAGGAATATTATCTCAACCTTTTGTCTTCAAGAGGGTGCATTGGTATCTCAGTCAAACAGGATGGCAACTTTGGAAAAGGTGTTTATGCAGACATGGACTTCAAAGAGGGAGAACTTGTTCTGAAGGATCCCATGTTCGTAGGGGTTCAACATTCCCTCAACAAGATTGATTGTTTGGTCTGTAGTTTCTGCTTTCGTTTTATTGGCTCCATTGAACTTCAAATAGGAAGGAGGCTTTACATGAAGCAACTAAGGGCCAATGAGAGTCATGGATGTGATGTCGGAAACTCTTCACAACACTTTCATGGAATGGATTCGTCTGATGAAGAAGAGAACACTCAGCAATGTACTTCTGGGATTTCCAAAACTAAGGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTAATGAATGGTAAATTGGTGTTGCCTTGCTCCGAGAAGTTCTCCTTGTTGCCAGCTGTGCCATGCTCTGGTGGATGTGGAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTTGCTGCTCTGTACTGGTGAGAGTTCTGATCCAGCTCGTAGAGAGGCACTCCTTAAATTCATCAAACATGCTAATGAAACAAATGACATATTCATCCTTGCTGCCAAGGCTATTTCTTCAACCATATTAAGGTATCACAAGTTAAAAGCAGTCAGTCTTGAAAAACAGGTGAAATATGATACATCCTGTTTTTCAAATGACCGAAGTTTATCTTTTCTTTTGGAAGCTTGGAGGCCTATATCGATGGGACACAAGAGAAGGTGGTGGGACTGTATTGCTTTGCCAGATGATGTGGATTCTTCTGACGAACCTTCATTCAGGCTGCAAATCAAAGAGTTGGCATTTGAGTCTCTACAACTTCTTAAGGCAGCCATATTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATCTATGGGCATATCATCGGCATGTTTGAGCTGAATAACCTTGATTTGGTTGTGGCTTCTCCGGTGGAGGATTACTTTTTATACATTGATGATCTTACACATCCTAACAAGGAAGAGGCTGAGAAAATTACACAACCGATTCTGGATGCACTTGGTGAAGACTATTCTATTTGTTGCGAAGGGACTGCATTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAAAGATGGCCAAGCAACAATAATTGCACAGAGGTCCATTTGTAAAGGAGAAGAGATAACCATATCATATGTTGATGAGGAGCTTCCATTTGAAGAGAGGCAGGCATCCCTTGCAGATTATGGTTTCAGATGCAGGTGTCCAAAGTGCATTGAAGAAGAGTCATAA 1455 0.422 MEPICPIGLPCASEISALFSPPSPLQIQEYYLNLLSSRGCIGISVKQDGNFGKGVYADMDFKEGELVLKDPMFVGVQHSLNKIDCLVCSFCFRFIGSIELQIGRRLYMKQLRANESHGCDVGNSSQHFHGMDSSDEEENTQQCTSGISKTKVPLPEGVVESLMNGKLVLPCSEKFSLLPAVPCSGGCGEAYYCSMSCAEADWESSHLLLCTGESSDPARREALLKFIKHANETNDIFILAAKAISSTILRYHKLKAVSLEKQVKYDTSCFSNDRSLSFLLEAWRPISMGHKRRWWDCIALPDDVDSSDEPSFRLQIKELAFESLQLLKAAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLTHPNKEEAEKITQPILDALGEDYSICCEGTAFFPLQSCMNHSCCPNAKAFKRDEDKDGQATIIAQRSICKGEEITISYVDEELPFEERQASLADYGFRCRCPKCIEEES 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01300 484 Gene3D SET domain 373 484 IPR046341 -
Phco10g01300 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Phco10g01300 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Phco10g01300 484 CDD SET_SMYD 393 479 - -
Phco10g01300 484 ProSiteProfiles Zinc finger MYND-type profile. 168 210 IPR002893 -
Phco10g01300 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 483 IPR044237 GO:0008168
Phco10g01300 484 SUPERFAMILY SET domain 43 477 IPR046341 -
Phco10g01300 484 SUPERFAMILY HIT/MYND zinc finger-like 178 211 - -
Phco10g01300 484 Gene3D - 125 214 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco10g01300 SET 5.1e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01300 10 35303299 35308850 Phco10g01300 10 35303299 35308850 ECH