Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01289 ATGGACATGAATTCCTCAGGTGCTGCCTCCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTGCTGACTTCATGGCTGCAGCAGACTCTGGAGGTTTTAATTGGGGCCCTCAAAATCACACCTTAAAGGCTCCTTCAAATACAAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCCTGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAGTCGTGTGCATCTGGTGCCAAGGCATGTCGCGAAAAATTGCGAAGGGATAAACTGAATGAGAGGTTTGTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCCGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCTGTTCGAGCGGTAGTCCAATTGAGAAATGAAGCCGAGAGGCTTAAGGAAATGAACGATGAATTACAGGGAAAAGTTAAAGAATTGAAGGCTGAGAAGAACGAGCTTCGTGATGAGAAGAATATGCTGAAGGAAGAGAAAGAAAAGTTGGAGCAACAGGTAAAACTGACAAATGTTATACAGCACAGCTTCCTGCCTCAAGCCCCAGCTGCTAAAGAACAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGCTATCCTGGAATTGCTATGTGGCAGTTTATGCCCCCTGCTGCAGTGGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 702 0.453 MDMNSSGAASGWLYDYGFDIPVAGADFMAAADSGGFNWGPQNHTLKAPSNTSLEMEYSLDSTVLENGPSKRLRTESCASGAKACREKLRRDKLNERFVELSSILEPGRPPKTDKVAILSDAVRAVVQLRNEAERLKEMNDELQGKVKELKAEKNELRDEKNMLKEEKEKLEQQVKLTNVIQHSFLPQAPAAKEQVGSHKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01289 233 Pfam Helix-loop-helix DNA-binding domain 81 126 IPR011598 GO:0046983
Phco10g01289 233 Gene3D arf6 gtpase in complex with a specific effector, jip4 127 179 - -
Phco10g01289 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 152 IPR036638 GO:0046983
Phco10g01289 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Phco10g01289 233 CDD bHLH_AtILR3_like 82 157 - -
Phco10g01289 233 SMART finulus 83 134 IPR011598 GO:0046983
Phco10g01289 233 FunFam Transcription factor bHLH34 69 126 - -
Phco10g01289 233 Gene3D - 71 126 IPR036638 GO:0046983
Phco10g01289 233 Coils Coil 118 180 - -
Phco10g01289 233 PANTHER BHLH TRANSCRIPTION FACTOR 2 233 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01289 Phco-Chr10 35239129 35240962 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco10g01289 HLH 6.7e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01289 10 35239129 35240962 Phco10g01289 10 35239129 35240962 ECH