Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01282 ATGCAAGTCACGTCCTCACATAGCCACATGAAAGCTGAGCTGAAGGGCACGTCCATTTCCTTTCAAAACCCTACTACTCTCTTTGACACACCACACAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTCGGAAGCCTCGATGGAGCTTGTATTGAGAAGCTCTTGCTCCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAGGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACCAACCAAAGGCTCACCTCGTGGTTTCTTAGGGCATTAATCTCTAGGACTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTGATGAGCGTAACAGAGCTAGCCGGGTATGTGGATCTCATTCCTTGGCATAGATTTGGTTATTGTGCATCCAATAATGAAATTTACAAAGCAATAACGGGGTACCAAAGGGTACATGTTCTAGATTTTAGTATAACCCATTGTATGCAATGGCCTACTTTTATAGATGGATTAGCGAAAAGGCCTGAAGGACCTCCTTCACTTAGAATCACGGTTCCATTTTGTAGACCACATGTACCCCCCTTGGTCAATGTATCAATACATGAGGTTGGTTTACGTTTAGGGAATTTCGCCAAGTTCAGAGATGTCCCTTTTGAATTCAATGTTATAGGAAACACAGGACCTTTAACACCTCCGGAATTGAGCGATGAATCAACTAGCTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTGCTACGCTAAACCTCAGGGAAGATGAAGCCTTGGTAATAAATTGCCAAAATTGGCTACGCTATTTGCCTGATGATAGAAAGGGAAGCCGCCAAAGTCTTTCACTTAGGGATGCCTTTTTGAATCTAATAAAGGGTCTTAACCCCCGGATTGTTCTCTTGGTTGACGAGGATTGTGATCTTAGTGTATCTAGTCTCACATCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACCTTTTTGCCTAAAGATAGTGGTCAGAGGACAGAGTTTGAATCCGACATAGGCCAGAAGATTGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATAGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTGGGTTACCTCAGTGTTCCATTTTGTGATGAAACTGTTAGGGAAGTTAAAGGTTTGCTAGATGAACATGCTAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAGCTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATGAGGGATCATATTGGAATGGATACAAGTCTGCCTTAA 1383 0.4432 MQVTSSHSHMKAELKGTSISFQNPTTLFDTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRTSRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAITGYQRVHVLDFSITHCMQWPTFIDGLAKRPEGPPSLRITVPFCRPHVPPLVNVSIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTPPELSDESTSFHFEAMLSLLNPATLNLREDEALVINCQNWLRYLPDDRKGSRQSLSLRDAFLNLIKGLNPRIVLLVDEDCDLSVSSLTSRITTCFNHLWIPFDALETFLPKDSGQRTEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEMRDHIGMDTSLP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01282 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 434 IPR005202 -
Phco10g01282 460 Pfam GRAS domain family 52 444 IPR005202 -
Phco10g01282 460 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01282 Phco-Chr10 35157822 35159204 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco10g01282 GRAS 8.1e-86 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01282 10 35157822 35159204 Phco10g01282 10 35157822 35159204 ECH