Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01270 ATGAAAAGAGCAGGTGTTGTGCTGCCGTTATCTCTTCTGCTTCTTCTCTGGCTGCCGCTATGCTTCCAAATATGTTTGGGAGGAGATACTCTGAAGGCTACCCAGAAGATAACTGACCAAAGAAGCCTTGTTTCATCAAACGCCACATTTGAGCTGGGCTTCTTTTCTCCTCCTGGTGTGAAGAGTGGCGAGAAAATATACCTGGGTATATGGTATCACGGGCTGCACCCACAAACAGTGGTGTGGGTTGCCAATAGAGAAGACCCTGTTGCAGATTCCAGTGGAGTTTTTCGAATTGCGGAGGATGGAAATGTGGTGGTTGAAGATGCATCCAGAAGGCACTGGTCCTCCAAACTTCAACCATCCTCGTCCACAAACAGAACATTGAAGCTCCTAGATTCGGGGAATCTAGTACTAATGGATGACTCTGAAACGACATACCCGTGGGAAAGCTTCCACAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGACTTTGCCGTTGACTTGTTGGAGAGACTCAGCTGACCCAGCACCTGGGAACTTCAGCTTCATGCTGACTCAAAAGGAAGGGAAACAAAGCTTCCGTGTGCAAAATGAAGAACAAATTTACTGGGCACTTGATGAACTTGACACAGAAGCGGCTTCCCAGATGGTATTTAATTTGTTGAACAACGACACCTCGGCTACTAAATCGTATAATTATTCTAACAAAACACTCTTCGTATCACAACCTTCCATGTACAATAAATCAAGGCTGTTGATGAATTCTAGCGGGGAGATAGTGTTTCTGCAGTGGGATGGGAAAGAATCCCAATGGAATAAGGAATGGTCGAGGCCAGAGGACAATTCTAATAGTTTTCCTTCTAATGGAGAATCGAAGTTCCAAGGGTGTACGAGAAAACCTATGCGGTGTACCAACAAGGACGTGACGTTCCTGAACTTAACCAACATAAAACTGGGCGACCCAGACCAACAAAGTTATACTAAAACAGAAGCAGAATGCCAATCCACATGCATCAACATGTGTCCCGATCAACAGTGCCAGGCATACTCATTTAATAATTCTATATACGGTGACCGTGGTTCATACTCGTGCAATATCTGGACGCGGAATTTACCTTCTCTTCTTGAGAACTACCAGCGCGGTCGTGATCTTTCTATCTTGGTTAACACATCAGATATAGCACCAACTGCAAAATCGTGTGAACCTTGCGGCACCTATGCAATTCCTTATCCGCTGAGCACTGGGCCAAACTGTGGAAACCCCTTGTACAACAAGTTCAATTGCACCAAATCCACTGGCAAAGTTAGTTTCATGATGCCCGGAGGAATATCATACCCAGTAACTTGGATCGATGAAGATACCAGAATGTTTTTCATTCAACCAGACTATTTCAATTCGTTTAATTCCAGTTTCAACCCTCAAAATAGCATTGATTCTCCGTTTCATGTAATTGAGAACAATGAAGGGGTCGTAATAAAAATCAATTGGCTACCAGCGCCAGAACCGCCGTGTAGTAAGCTTATAGATTGCATGAATTGGCCATATTCGACATGCAGAGCAACGAGGGAAGGAGAAAGTAGGTGTCTTTGTGATTCAAACTATAAGTGGAATAACACAATCATGAGATGCACCCGTCTTTGTGATTCAAACTATATTTGGAATGACACAATCATGAGATGCACCCGAGGAAATCATTCAACCCGACTGAAATTGATTCTTTTAGTAACTCTTGGTTCCCTGGCTACTGTGGCATGCATAACAGCATTTGGCATTGTGTGGAAAAAGAAAAAGGCCCGTAAGCCAGATCGCGCAAGCACCCGAATTCAGGAGAGCTTGCATGAGAGTGAAAGACATGTGAAAGGTCTGATTGGTTTGGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTGCCCTGTTACACTTTTGCAAGCATTCTCGCAGCTACAGATAATTTCTCAGACTCTAACAAGCTTGGAAGAGGAGGCTATGGACCTGTTTATAAGGGAATGTTTCCTGGAGGTCAAGAAATAGCTGTAAAGAGACTTTCAAGTGCTTCCACTCAAGGCCTACAAGAATTCAAGAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTGGTCAGACTGAGGGGCTACTGCATAAAAGGGGTTGAAAAAATCTTACTTTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCGGAGTCGAACTATACTCTTGGATTGGCCAATGCGGTTTGAGATAATTGTAGGCATTGCACGAGGCATGCTCTACCTTCACCAAGACTCCAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAATGTTCTTCTAGACGAGGAAATGAATCCAAAGATATCAGACTTTGGCCTTGCCAAAATATTTGGAGGAAAAGAAACTGAAGCAAGTACAGAGAGAGTGATGGGAACCTTTGGATACATGGCTCCAGAGTATGCTTTGGATGGATTTTTTTCAGTCAAATCTGATGTTTTCAGCTTTGGAGTAGTCCTACTAGAGATTCTTAGTGGAAAGAAGAACACAGGATTCTACGAGTCCAAGCAAATCTCTAGCCTTTTGGGTTATACATGGAATTTATGGTCAGGGAACAAGCTACTGGATTTAATGGATTCGTGCCTTCGTGAAACATGCAACCAAAATCAATTCATTAAGTGTGCAGTTATTGGGCTATTATGCACACAAGATGAACCAATTGATCGACCCACTATGTCAAATATTTTATACATGCTTGACGTAGAGACAACAACCATGCCAGTTCCCAGACAACCAACATTTTTTATGACCAAGCGTTATTCTAGCTCAGCTTCCTCTTCCACCAATCCAGAAATAAGTTTGCATCTTGACACCAGTTATCAACAAGGTCGATAG 2925 0.4294 MKRAGVVLPLSLLLLLWLPLCFQICLGGDTLKATQKITDQRSLVSSNATFELGFFSPPGVKSGEKIYLGIWYHGLHPQTVVWVANREDPVADSSGVFRIAEDGNVVVEDASRRHWSSKLQPSSSTNRTLKLLDSGNLVLMDDSETTYPWESFHNPTDTFLPGMKMDATLPLTCWRDSADPAPGNFSFMLTQKEGKQSFRVQNEEQIYWALDELDTEAASQMVFNLLNNDTSATKSYNYSNKTLFVSQPSMYNKSRLLMNSSGEIVFLQWDGKESQWNKEWSRPEDNSNSFPSNGESKFQGCTRKPMRCTNKDVTFLNLTNIKLGDPDQQSYTKTEAECQSTCINMCPDQQCQAYSFNNSIYGDRGSYSCNIWTRNLPSLLENYQRGRDLSILVNTSDIAPTAKSCEPCGTYAIPYPLSTGPNCGNPLYNKFNCTKSTGKVSFMMPGGISYPVTWIDEDTRMFFIQPDYFNSFNSSFNPQNSIDSPFHVIENNEGVVIKINWLPAPEPPCSKLIDCMNWPYSTCRATREGESRCLCDSNYKWNNTIMRCTRLCDSNYIWNDTIMRCTRGNHSTRLKLILLVTLGSLATVACITAFGIVWKKKKARKPDRASTRIQESLHESERHVKGLIGLGSLEEKDIEGIEVPCYTFASILAATDNFSDSNKLGRGGYGPVYKGMFPGGQEIAVKRLSSASTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGVEKILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNVLLDEEMNPKISDFGLAKIFGGKETEASTERVMGTFGYMAPEYALDGFFSVKSDVFSFGVVLLEILSGKKNTGFYESKQISSLLGYTWNLWSGNKLLDLMDSCLRETCNQNQFIKCAVIGLLCTQDEPIDRPTMSNILYMLDVETTTMPVPRQPTFFMTKRYSSSASSSTNPEISLHLDTSYQQGR 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01270 974 SMART ntp_6 310 395 IPR003609 -
Phco10g01270 974 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 171 IPR036426 -
Phco10g01270 974 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 117 952 - -
Phco10g01270 974 CDD STKc_IRAK 664 930 - -
Phco10g01270 974 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 625 733 - -
Phco10g01270 974 Gene3D - 24 153 IPR036426 -
Phco10g01270 974 SUPERFAMILY Protein kinase-like (PK-like) 643 956 IPR011009 -
Phco10g01270 974 SMART blect_4 34 155 IPR001480 -
Phco10g01270 974 FunFam Receptor-like serine/threonine-protein kinase SD1-8 23 152 - -
Phco10g01270 974 ProSiteProfiles Protein kinase domain profile. 658 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01270 974 ProSiteProfiles Bulb-type lectin domain profile. 28 152 IPR001480 -
Phco10g01270 974 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 734 937 - -
Phco10g01270 974 Pfam PAN-like domain 308 377 IPR003609 -
Phco10g01270 974 Gene3D Transferase(Phosphotransferase) domain 1 734 938 - -
Phco10g01270 974 MobiDBLite consensus disorder prediction 281 298 - -
Phco10g01270 974 CDD B_lectin 34 155 IPR001480 -
Phco10g01270 974 Pfam D-mannose binding lectin 79 166 IPR001480 -
Phco10g01270 974 ProSiteProfiles PAN/Apple domain profile. 308 396 IPR003609 -
Phco10g01270 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Phco10g01270 974 Pfam Protein tyrosine and serine/threonine kinase 661 927 IPR001245 GO:0004672|GO:0006468
Phco10g01270 974 Gene3D Phosphorylase Kinase; domain 1 632 733 - -
Phco10g01270 974 MobiDBLite consensus disorder prediction 278 298 - -
Phco10g01270 974 SMART serkin_6 658 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01270 Phco-Chr10 34961514 34965490 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g01270 PK_Tyr_Ser-Thr 5.2e-45 CL0016