Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01268 ATGAAGAACTGCGAGCTATGCAAGGTTCCGGCTCGGACCTTCTGCGAGTCGGACCAGGCCAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGTGCCAACTTCCTCGTCGCCAGACATACACGCACGCTCCTCTGCCACACCTGCCAGTCACTCACGCCCTGGAAGGCCTCCGGCGCCGCCCTCGGAAACACCGTCTCCCTCTGCGAGAGGTGCGCCGGCGGAACCGCCGAACAAGATCAGGAGAGCCACGGAGGCAATGACGACGACTTAGACACAGACGAAGATGACTACGACGACGATGACGAGACCGACGACGAGGTCGCCGCCGACGAGGATGGAGACAACCAGGTTGTCCCTTGGTCCTCCACGCCGCCTCCGCCGCCTGCCTCGAGCTCTTCCAGTAGCGAAGAGTCGGTTAGCCGGTGCAACAACGCCGACGAGGATGTTTCGACCACATTGAAACGACGTCGTGAGGACAATGATTTCGAGTGTTCGAATTCGAATAATTGGGGATGTCAACAGAGCGAAGGGGAGAGAGGAGGCTGGTTAGTTCGGTTGCGGCGGCGAACCGCCGTGGAAGGTAACGGTCTTGCTGTTGAGCGACGGAGTGGTAGAACGGTGGCTCCCTACGGTGGCGGTGATGATGATAGAGCCTCTGAAGACCTTTGA 672 0.5997 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHTCQSLTPWKASGAALGNTVSLCERCAGGTAEQDQESHGGNDDDLDTDEDDYDDDDETDDEVAADEDGDNQVVPWSSTPPPPPASSSSSSEESVSRCNNADEDVSTTLKRRREDNDFECSNSNNWGCQQSEGERGGWLVRLRRRTAVEGNGLAVERRSGRTVAPYGGGDDDRASEDL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01268 223 SMART bboxneu5 1 45 IPR000315 GO:0008270
Phco10g01268 223 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Phco10g01268 223 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Phco10g01268 223 MobiDBLite consensus disorder prediction 204 223 - -
Phco10g01268 223 MobiDBLite consensus disorder prediction 77 182 - -
Phco10g01268 223 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 177 - -
Phco10g01268 223 CDD Bbox1_BBX-like 4 45 - -
Phco10g01268 223 MobiDBLite consensus disorder prediction 133 148 - -
Phco10g01268 223 MobiDBLite consensus disorder prediction 85 113 - -
Phco10g01268 223 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01268 Phco-Chr10 34940282 34941175 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco10g01268 zf-B_box 9.5e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01268 10 34940282 34941175 Phco10g01268 10 34940282 34941175 ECH
Phco10g01268 10 34940282 34941175 Phco9g01215 9 11754127 11754786 PCT