Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01267 ATGAAGAACCCATGGTTCTGCATCTCTCTTCTCACCCTATTCTTCTCTTTGTTCACCCACAATTCCCTTGCGGCTCTCACAACCGTATCCGCAAACCAAACTCTCACTGGGGACCAAACCCTCGTCTCTGAAGGTGAAATCTTCGAGCTGGGTTTCTTCAAACCGGGTAATTCCTCTAACTACTACATAGGCATATGGTACAAAAAGGTCACCAAACAAACAATTGTTTGGGTAGCAAATAGAGACAACCCAGTCTCTGATAAGAACACTGCCACGTTAAGAATATCAGGTGGCAATCTAGTTATCTTGGATGGATCTTCTAAACAAGTTTGGTCCACAAACATGAGTTCTTCCGGGTCAGGTTCTGTCGTAATAGCTACTCTCCTCGATTCCGGGAATCTTGTGTTAAGAGATAGACATAATGGTGCTTCTGCTTCCAAACCTCTGTGGCAGAGTTTTGATCATCCAACTGACACGTGGCTTCCAGGTGGAAAAATCAAACTGGACAATAAAACCAAGCAACCTCAATACCTCACTTCATGGAAGAACAACGAAGATCCTGCGACGGGTCTTTTTTCTCTGGAACTAGACCCCAAAGGAACCACTTCTTATTTGATTCTTTGGAACAAGTCTGAACAGTACTGGACAAGTGGTCCTTGGAATGGCCACATTTTTAGTTTAGTTCCGGAGATGAGGGCGAACTTTCTCTACAATTTCACGTTTGTGTCGAACGACAACGAGAGCTATTTCACATACTCCATGTATAACTCTTCCATTGTATCTCGGTTTGTGATGGATATCTCGGGGCAGGTCAAGCAACTCTCGTGGTTGGAGAATGCTCAGCAGTGGAACTTGTTTTGGTCACAGCCGAGACAACAGTGTGAGGTATACGCGTTTTGTGGTGTCTTTGGGAGCTGTACTGAGAATTCCATGCCGTATTGTAATTGCTTGCCGGGTTTTGAGCCAAAGTCACTGTCTGATTGGAATCTGGAGGATCACTCAGGTGGGTGTGAAAGGAAAACCAAGTTGCAGTGTGAGAATTTGAATCCCTCTAAAGGGGATAAGGACAGGTTTCTTGCGATTCCCAACATGGCGTTACCTAAACATGCACAATCTGTAGGATCAGGGAAGGCAGGGGAATGTGAATCGACTTGCTTAAACAACTGTTCCTGCACGGCTTATGCATATGACAGTAACGGGTGTTTTATTTGGATTGGCAACCTTTTGAATCTGCAGCAGCTATCTTTAGATGATAGTAGCGGAGAAACTTTGTATCTCAAACTTGCAGCATCTGAGTTTCATGATGATAAAAGCAGTAAGGGGACTGTTATTGGTGTGGCTGTGGGACTGGTTGTTGGCATTGGGGTTCTCTTGGTCATTCTTTTGTTTTTCGTGATTAGGCGAAGGAAGAGAATGGTTGGAGCAGGAAAGCCTGTGGAGGGTACGTTGGTCGCATTTGGGTACCGAGATTTGCAAAATGCAACGAGGAATTTTTCAGAGAAATTGGGAGGAGGAGGGTTTGGTTCTGTTTTCAAAGGAACGTTGGGTGATTCAAGTGTGGTAGCAGTGAAAAGGTTGGAGAGTATTAGCCAAGGAGAAAAACAGTTCCGAACAGAAGTTAGCACAATAGGGACAGTGCAACATGTTAATCTTGTTAGGCTCCGTGGATTCTGCTCTGAAGGTGCAAAAAAGCTGCTAGTTTATGATTACATGCCAAATGGCTCCTTGGATTTCCATTTGTTCCAGAACAAGAGCTGTAAAGTGTTGTTGGATTGGAAAATGAGATACCAAATTGCGTTGGGAACGGCAAGGGGATTAACTTACCTTCACGAGAATTGTAGAGATTGTATCATACACTGTGATGTGAAGCCAGAAAACATTCTGCTAGATTCTGAATTTTGTCCCAAGGTTGCAGACTTTGGCCTGGCTAAGCTTGTTGGAAGAGATTTCAGCAGGGTTCTCACAACCATGAGAGGAACAAGAGGTTATCTAGCTCCCGAGTGGATTTCTGGGGTGGCTATCACAGCCAAAGCTGATGTGTACAGCTATGGAATGATGCTTTTTGAGTTTGTATCCGGAAGGAGGAACTCTGAGCCATCAGAAGATGGCCAATTTACCTTCTTTCCAACCTTTGCGGCAAACGTTGTTGTCCAAGGTGGTCCTGTTGTTAGCCTTTTGGAGAATGGTTTGGAGGGCAATGCTGAGATTGAGGAGGTGACTCGAATAATAAAAGTTGCTTCATGGTGTGTCCAAGACAATGAGGCTCACCGGCCAAGCATGGCTCAGGTGGTTCAAATCCTTGAGGGGATCTTAGAGGTGAACATGCCTCCAATTCCAAGATCCCTTCAAGTGTTTGTTGACAACCAGGAGAATTTAGTCTTTTACACCGACTCAAACTCCACACACAGTTCCCAGGAGAAGAGCAACGTTTCAATGACCTCCTCTCAAGCCAGAAGTAACATCTCTTCAGCAAGCTCCAAGTCCACTGGAGGAGAAAATTAG 2502 0.4472 MKNPWFCISLLTLFFSLFTHNSLAALTTVSANQTLTGDQTLVSEGEIFELGFFKPGNSSNYYIGIWYKKVTKQTIVWVANRDNPVSDKNTATLRISGGNLVILDGSSKQVWSTNMSSSGSGSVVIATLLDSGNLVLRDRHNGASASKPLWQSFDHPTDTWLPGGKIKLDNKTKQPQYLTSWKNNEDPATGLFSLELDPKGTTSYLILWNKSEQYWTSGPWNGHIFSLVPEMRANFLYNFTFVSNDNESYFTYSMYNSSIVSRFVMDISGQVKQLSWLENAQQWNLFWSQPRQQCEVYAFCGVFGSCTENSMPYCNCLPGFEPKSLSDWNLEDHSGGCERKTKLQCENLNPSKGDKDRFLAIPNMALPKHAQSVGSGKAGECESTCLNNCSCTAYAYDSNGCFIWIGNLLNLQQLSLDDSSGETLYLKLAASEFHDDKSSKGTVIGVAVGLVVGIGVLLVILLFFVIRRRKRMVGAGKPVEGTLVAFGYRDLQNATRNFSEKLGGGGFGSVFKGTLGDSSVVAVKRLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGAKKLLVYDYMPNGSLDFHLFQNKSCKVLLDWKMRYQIALGTARGLTYLHENCRDCIIHCDVKPENILLDSEFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEPSEDGQFTFFPTFAANVVVQGGPVVSLLENGLEGNAEIEEVTRIIKVASWCVQDNEAHRPSMAQVVQILEGILEVNMPPIPRSLQVFVDNQENLVFYTDSNSTHSSQEKSNVSMTSSQARSNISSASSKSTGGEN 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01267 833 CDD STKc_IRAK 502 770 - -
Phco10g01267 833 CDD B_lectin 32 156 IPR001480 -
Phco10g01267 833 SMART ntp_6 353 428 IPR003609 -
Phco10g01267 833 ProSiteProfiles Bulb-type lectin domain profile. 26 149 IPR001480 -
Phco10g01267 833 FunFam Receptor-like protein kinase 4 464 570 - -
Phco10g01267 833 Pfam D-mannose binding lectin 74 182 IPR001480 -
Phco10g01267 833 Gene3D Transferase(Phosphotransferase) domain 1 571 777 - -
Phco10g01267 833 PIRSF SRK 1 818 IPR024171 GO:0004674
Phco10g01267 833 Gene3D Phosphorylase Kinase; domain 1 464 570 - -
Phco10g01267 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Phco10g01267 833 PANTHER OS07G0415500 PROTEIN 8 779 - -
Phco10g01267 833 ProSiteProfiles Protein kinase domain profile. 496 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01267 833 Pfam Protein kinase domain 499 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01267 833 SMART serkin_6 496 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01267 833 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Phco10g01267 833 FunFam Serine/threonine-protein kinase 571 775 - -
Phco10g01267 833 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Phco10g01267 833 Pfam PAN-like domain 353 410 IPR003609 -
Phco10g01267 833 CDD PAN_AP_plant 341 429 - -
Phco10g01267 833 CDD TM_EGFR-like 437 471 - -
Phco10g01267 833 SUPERFAMILY Protein kinase-like (PK-like) 483 768 IPR011009 -
Phco10g01267 833 MobiDBLite consensus disorder prediction 797 833 - -
Phco10g01267 833 Gene3D - 23 154 IPR036426 -
Phco10g01267 833 FunFam Serine/threonine-protein kinase 21 153 - -
Phco10g01267 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 221 IPR036426 -
Phco10g01267 833 ProSiteProfiles PAN/Apple domain profile. 345 429 IPR003609 -
Phco10g01267 833 SMART blect_4 32 156 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01267 Phco-Chr10 34898381 34900882 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco10g01267 Pkinase 6.8e-47 CL0016