Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01179 ATGGATCAGCAACAGGAAAATCAACCTTCTTCAACCAGAGTCGACAGAAAGATTGTAGAGAAAAACAGGCGAAACCATATGAAGAATCTTTATTCTGAACTCAACGCTCTTCTCCCTAGTTATAATCCCAAGCAAGTGCTGGCACTGCCTGATCAAATAGATGAGGCAACGGAGTACATAAAAAGCCTAGAGGCAAAAGTTAGGATGGCGAAGGAGAAGAAAGAAAGGTTAATGGAAAGGAAGAGAACTCGAAGTGGTTTCTCTAGTGGTTTTGAAGGACGAGGAAACCTAAAACCACCAAAAATGGAGATTCATGAAACGGGTTCTGTGCTTCGAGTCATTCTAACATGTGGGGTTGATAACCATTTCGTTTTCTGTGAAATTATCAGAATATTGCATGAAGAGAATGTTGACGTATTCAGTACCAGTTATTCAGTTGTTGGAGATTCGGTGATTCATGTTGTGCTCGGGGAGGTTGGGCAATCAATGTTCCAATCTGGAGCTAGCAAAGTGAGAGAGAAGCTGAAATGGTTCGTAAACGGATCCTTCTGTGATGAAGAAGTGGACCCTAATGTTATGGGATTCTGA 588 0.4167 MDQQQENQPSSTRVDRKIVEKNRRNHMKNLYSELNALLPSYNPKQVLALPDQIDEATEYIKSLEAKVRMAKEKKERLMERKRTRSGFSSGFEGRGNLKPPKMEIHETGSVLRVILTCGVDNHFVFCEIIRILHEENVDVFSTSYSVVGDSVIHVVLGEVGQSMFQSGASKVREKLKWFVNGSFCDEEVDPNVMGF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01179 195 FunFam Transcription factor bHLH162 5 89 - -
Phco10g01179 195 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Phco10g01179 195 SMART finulus 17 69 IPR011598 GO:0046983
Phco10g01179 195 MobiDBLite consensus disorder prediction 1 22 - -
Phco10g01179 195 Coils Coil 53 80 - -
Phco10g01179 195 Gene3D - 2 87 IPR036638 GO:0046983
Phco10g01179 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Phco10g01179 195 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 177 - -
Phco10g01179 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 81 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01179 Phco-Chr10 33852390 33853282 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco10g01179 HLH 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01179 10 33852390 33853282 Phco10g01179 10 33852390 33853282 ECH