Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01172 ATGAGCAGTGTCTGTGCCGAGCAGCACAAGTTTCACCCCTCTCACCAATTCCTCTCTCCAAAGAAAACCCTCAGAGAGATTGACATCCCTCCAAGGAAGCTCCTCACCCGCCGCGCCGCCGCTGCATGCGGCGGCTCAGACTTGTTCTCAGACGACACCATGCTGCAAAAGTTCCTACCTTCCAACAACCTTGATGACTCCGATGAGGACGACCCTTACTCCTCCGACCACTTCAGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGCAGCCGGAGTCACGACTGGACTGACTGCCCTTTTGCCCACCCCGGCGAAAAGGCTCGCCGCCGCGACCCTCGGCGGTATCACTACTCGGGAACTGTGTGTCCTGATTATCGCCGTGGAGGGTGCAATCGTGGTGATGCATGTGAATACGCTCATGGCGTATTTGAATGCTGGCTGCACCCTGCCAAATACAGGACAGAGGCCTGTAAGGATGGGAAGAACTGCAAGAGAAAGGTGTGTTTCTTTGCACACACACCTCGCCAGCTCAGAATTTTACCGGTAACTTCTCCTTCTTCAAATGACATGCCTTGCAAGAAGAGCATTAACAAGCTCTTCAACCATGCTTCAAGATCCAACAACAACTGTTGTTTGTTTTGCCATTGTGTTTCTTCTTCTTCTTCCACCGCTTCTCCAACTTCCACCCTCTTCAACATTTCTCATTACTCGCCGCCGCTATCACCATCGTCCTCCTCCTCACCACCTCCTTCTCCTTTGAAACCCCGAAACGGGGTTTCTGTTTCTCCAATTTCCCGATATGGTGCTGCCAATGTAAACCCTCATCATGGGGTGGTGAGTTACAAAGAAGCGTTCGCTGAATTTGTGAACTCCTTGGAGGGTCTGAGTTTGAACGAGGGTTCTCCTGTTTCTGGTGCCAAACCATTGAACTTGCCTTGGCTTGATGTTTCTCTGAACTGTGAGGAACAGCAACAACAACGACAACCGCTCATTGCTTCTTCTTTTGGCTGCGAAGATCCGCAGCAATTTATTTTTTCACCACCGTCCACTCGGACACCGACAAATGGTAAGTTCTGCAGCAACAGATTCATAGGCAACGACAACAAGGTTGTCGGTGCTGACTCAAATGTCCCAGATCTCGCGTGGGTGAATGAGTTGCTGATGTAG 1170 0.5111 MSSVCAEQHKFHPSHQFLSPKKTLREIDIPPRKLLTRRAAAACGGSDLFSDDTMLQKFLPSNNLDDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPDYRRGGCNRGDACEYAHGVFECWLHPAKYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSNDMPCKKSINKLFNHASRSNNNCCLFCHCVSSSSSTASPTSTLFNISHYSPPLSPSSSSSPPPSPLKPRNGVSVSPISRYGAANVNPHHGVVSYKEAFAEFVNSLEGLSLNEGSPVSGAKPLNLPWLDVSLNCEEQQQQRQPLIASSFGCEDPQQFIFSPPSTRTPTNGKFCSNRFIGNDNKVVGADSNVPDLAWVNELLM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01172 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Phco10g01172 389 Gene3D - 118 181 - -
Phco10g01172 389 SUPERFAMILY CCCH zinc finger 116 146 IPR036855 GO:0046872
Phco10g01172 389 MobiDBLite consensus disorder prediction 242 261 - -
Phco10g01172 389 PANTHER UNKEMPT FAMILY MEMBER 51 388 IPR045234 -
Phco10g01172 389 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Phco10g01172 389 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Phco10g01172 389 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Phco10g01172 389 MobiDBLite consensus disorder prediction 243 257 - -
Phco10g01172 389 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01172 Phco-Chr10 33728001 33729170 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco10g01172 zf-CCCH 4.1e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01172 10 33728001 33729170 Phco10g01172 10 33728001 33729170 ECH