Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01163 ATGCTGGCGGTGTCACCTTTGAGGAGCAGAAGAGATGAAGAGCAAGGGGAGATGGAGAGTTTCTCCATTGGAACTGATGACTTTGCTGACCTTTCAGAAGGGAACTTGCTTGAAAGCATCAACTTTGATGATCTCTTCATGGGAATCAACGATGACGAAGATGTCTTGCCAGATCTGGAGATGGACCCTGAATTGCTTGCTGAGTTCTCCCTCAGTGAGGAATCGGAGATAGTCTCATCAGTTTCAGTGGCAAATAACAAATCTGATGACAGAAGTGAGAATAATATAGTTACTACAGAGAAACAAAATGAGGTTATAGCAGCCAATTTTTGTTCGGATTCTGGTTCCAATTCGGGGTCAAGTAGAGGGGAAGAGATAGGAAGCAAGAGTGGTGAATCAACTCATTCAGTGGGGGTGAATCCATCCCCTAAGGAAAGTGAGAAAGGAAGAAAACCATCAACCCATTCAAGGAATAATCAGCAAGGGAAGAGAAAGGTAAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGACTGTCTCACCCGCCATAACATTGCCAGCCATCTTCAAAAATATCGATCTCATAGGAAGCATTTGATAGCACGTGAAGCTGAAGCAGCAAGGTGGAGTCAAAGGAAACAATTCATGGGTGCAGCAACTGTAGGTAGAGGAGGAGGAGGAGGTAAGAGAGACGTGAACCCTTGGCTTGCACCTACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTTAGGCCTTTACATGTATGGGGACATCACACCATGGACCAGTCCTTCATGCACATGTGGCCTAAACATCTCCCATATTCACCGTCTCCGCCGGCATGGCCACCGCGAACAGTTCCATCTCCGCCGCCGCCGGACCCTCTTTATTGGCACCAACATCAACGGGCTCCAAACGCACCAACACCAGGAACACCGTGTTTTCCACAGTCTCTGACAACCACGAGATTTGGCTCTCAAACTGTTCCGGGCATCCCACCACACCATGCAATGTTCCAAATGGTAGTAGATCCAGGCATTGCCATCCCAGCCACCCAACCAACACCTCGACCCCTCCTCGATTTTCATCCGTCAAAGGAGAGCATAGATGCTGCTATTAGTGATGTTTTATCAAAACCATGGTTGCCACTACCCCTTGGCCTTAAAGCTCCAGCAGTTGAAGGTGTAATGGGTGAACTACAAAGACAAGGGATTCCCAAAATCCCTCCCTCTTGTGCTTGA 1317 0.4806 MLAVSPLRSRRDEEQGEMESFSIGTDDFADLSEGNLLESINFDDLFMGINDDEDVLPDLEMDPELLAEFSLSEESEIVSSVSVANNKSDDRSENNIVTTEKQNEVIAANFCSDSGSNSGSSRGEEIGSKSGESTHSVGVNPSPKESEKGRKPSTHSRNNQQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLIAREAEAARWSQRKQFMGAATVGRGGGGGKRDVNPWLAPTMGFPPMTPMHHFRPLHVWGHHTMDQSFMHMWPKHLPYSPSPPAWPPRTVPSPPPPDPLYWHQHQRAPNAPTPGTPCFPQSLTTTRFGSQTVPGIPPHHAMFQMVVDPGIAIPATQPTPRPLLDFHPSKESIDAAISDVLSKPWLPLPLGLKAPAVEGVMGELQRQGIPKIPPSCA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01163 438 MobiDBLite consensus disorder prediction 109 141 - -
Phco10g01163 438 FunFam Two-component response regulator 160 224 - -
Phco10g01163 438 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 437 IPR044825 GO:0003700|GO:0045893
Phco10g01163 438 Pfam Myb-like DNA-binding domain 168 217 IPR001005 -
Phco10g01163 438 MobiDBLite consensus disorder prediction 81 100 - -
Phco10g01163 438 Gene3D - 162 223 - -
Phco10g01163 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 221 IPR017930 -
Phco10g01163 438 NCBIfam myb-like DNA-binding domain, SHAQKYF class 165 219 IPR006447 GO:0003677
Phco10g01163 438 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Phco10g01163 438 MobiDBLite consensus disorder prediction 1 25 - -
Phco10g01163 438 MobiDBLite consensus disorder prediction 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01163 Phco-Chr10 33639870 33643237 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco10g01163 Myb_DNA-binding 5.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01163 10 33639870 33643237 Phco10g01163 10 33639870 33643237 ECH