Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01101 ATGTCAGGAGTGGGACCTCTCTCGCAGGATTGGGAACCAGTGGTGCTTCGCAAAAAAGCCCCCACTTCCGCCGCCCGCAAGGATGAGAAAGCCGTCAACGCGGCTCGCCGTTCCGGCGCCGACATCGACACCATAAAAAAATATAATGCTGGAACAAACAAAGCTGCTTCCAGTAGCACTTCATTGAATACTAAGAGGCTGGATGATGATACCGAGAATCTAACTCATGATCGGGTACCAACTGAACTCAAGAAAGCTATAATGCAGGCCCGGATGGACAAGAAACTAACTCAGGCTCAGCTTGCTCAATTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGGAAAGCCATTCCAAACCAGCAGATCATTGGCAAGTTGGAGAGAGCCCTTGGTGCCAAACTGCGTGGCAAGAAATGA 429 0.5012 MSGVGPLSQDWEPVVLRKKAPTSAARKDEKAVNAARRSGADIDTIKKYNAGTNKAASSSTSLNTKRLDDDTENLTHDRVPTELKKAIMQARMDKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01101 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Phco10g01101 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Phco10g01101 142 MobiDBLite consensus disorder prediction 21 39 - -
Phco10g01101 142 MobiDBLite consensus disorder prediction 1 39 - -
Phco10g01101 142 SMART mbf_short4 86 141 IPR001387 -
Phco10g01101 142 Coils Coil 87 107 - -
Phco10g01101 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Phco10g01101 142 Gene3D - 71 142 IPR010982 GO:0003677
Phco10g01101 142 CDD HTH_XRE 85 135 IPR001387 -
Phco10g01101 142 FunFam Multiprotein bridging factor 1 71 142 - -
Phco10g01101 142 MobiDBLite consensus disorder prediction 51 74 - -
Phco10g01101 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Phco10g01101 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01101 Phco-Chr10 32665972 32668994 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Phco10g01101 MBF1 5.7e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01101 10 32665972 32668994 Phco10g01101 10 32665972 32668994 ECH
Phco10g01101 10 32665972 32668994 Phco9g01484 9 34628473 34631321 PCT