Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01029 ATGGTTTCCCCGGAAAACAGCAATTGGCTTTTCGACTACCCGTTGATTGACGATGACATTACCGTCGGAGACGGTTCCTTCACCGTCTCCGCTTTCTCCTGGCCCCCACCTCCCTCCAATGTCAGTGTTCAAATTGATGCTTCACTCGTTGATTCCGATGGCCTCAGAGATCCTGCCTTGAAAAAGAGGGGTAGATCTGATTTATGTACTGCTTCTAGCTCTAAGGCGTGTCGGGAGAAGTTGCGAAGGGATAGGCTTAATGACAAATTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCTAAAACAGACAAGGCTGCCATTCTGATTGATGCTGTCCGTATGGTGACACAGCTGCGGGATGAAGCCCAGAAGTTGAAAGAGTCAAATACGAGTCTTCTAGAGAAGATTAAAGAGTTAAAGACTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGTAGAGAAAGAGAAGTTGGAGCTGCAGGTAAAATCAATGAATGCCCAACCTGCTTTCTTGCCACCCCCTCCTGCAATCCCCGCTGCGTTTGCTCCACAAGGTCAAGCCCCGGGCAACAAGTTGGTGCCTTTCATCAGTTATCCGGGTGTTGCCATGTGGCAATTTATGCCTCCGGCCGCAGTGGATACATCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 696 0.4914 MVSPENSNWLFDYPLIDDDITVGDGSFTVSAFSWPPPPSNVSVQIDASLVDSDGLRDPALKKRGRSDLCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRDEAQKLKESNTSLLEKIKELKTEKNELRDEKQRLKVEKEKLELQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01029 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Phco10g01029 231 FunFam Transcription factor bHLH104 73 154 - -
Phco10g01029 231 CDD bHLH_AtILR3_like 75 150 - -
Phco10g01029 231 Gene3D - 73 145 IPR036638 GO:0046983
Phco10g01029 231 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
Phco10g01029 231 Coils Coil 111 173 - -
Phco10g01029 231 SMART finulus 76 127 IPR011598 GO:0046983
Phco10g01029 231 PANTHER BHLH TRANSCRIPTION FACTOR 4 231 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Phco10g01029 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01029 Phco-Chr10 30787238 30789059 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco10g01029 HLH 4.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01029 10 30787238 30789059 Phco10g01029 10 30787238 30789059 ECH
Phco10g01029 10 30787238 30789059 Phco9g01611 9 37821840 37825108 PCT