Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01016 ATGAAAGAGGAGTCAACTGGGCTTATCATCGGGATTTCCATAGGTGTGGTGATTGGAGTTGCTTTGGCAATTTCTGCGTTGTTCTGTATTAGATATCACCGGAAGCGGTCACAGATAGGCAATAGCAGTTCCCGTAGAGCAGCTGCCGTACCTATCCGCCAAAATGGTTTTGATTCTTGCACTATTCTATCAGACTCAACCTTGGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCACCTCCTTCTGGCTTGAGGGCTTCAAGAAGAATAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACCGGGGAGACTGTTGCAGTTAAAGTTCTCGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGGAATCTGGTCAATTTGGTTGGGTATTGTGCGGAAAAGGGGCAACATATGCTTATATATGTGTACATGAGTAAAGGCTGCTTGGCTTCCCACTTGTACAGTGAAGAGAATGGAGCTCTGGGTTGGGAATTGAGGGTTCATATAGCTTTAGATGTAGCAAGAGGAATAGAGTATCTTCATGATGGGGCAGTACCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTCTCAAGAGTAGAGATGGTGGATAAACATGCAGCAATTCGGGGTACCTTTGGGTATCTTGATCCTGAGTATATATCTTCAGGAACATTCACCAAAAAAAGTGATGTATACAGTTTTGGGGTTTTGCTCTTTGAACTTATAGCGGGCAGAAATCCTCAGCAAGGTCTAATGGAATATGTTGAGCTTGCAGCAATGAACAGTGAGGGGAAAGTTGGTTGGGAGGAGATAGTTGATTCAAGGCTTGAGGGTAAATGTGAGTTTGAAGAGGTGAATGAAGTGGCAGCCCTTGCCTACAAATGCATCAACCGTGCCCCAAAGAAACGCCCTTCCATGAGGGACATTGTGCAAGTTTTCACACGAATCCTCAAGTCAAGGCACCAAAGGAATCATCATCACAAGAACTCCCTCTCAGCCACAGCTGATGAAGTTTCCATTGATGTTGATCACCTAGAAACCAACACTTCTCTCCCTCAGCACACAAGAGAAGAATCTATAGATAGTACACCTGACATCTATGATTTGTAG 1296 0.4367 MKEESTGLIIGISIGVVIGVALAISALFCIRYHRKRSQIGNSSSRRAAAVPIRQNGFDSCTILSDSTLGPESPVRSGRNGTSFWLEGFKKNSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGCLASHLYSEENGALGWELRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSRVEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNSEGKVGWEEIVDSRLEGKCEFEEVNEVAALAYKCINRAPKKRPSMRDIVQVFTRILKSRHQRNHHHKNSLSATADEVSIDVDHLETNTSLPQHTREESIDSTPDIYDL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01016 431 Gene3D Transferase(Phosphotransferase) domain 1 189 404 - -
Phco10g01016 431 Pfam Protein tyrosine and serine/threonine kinase 115 374 IPR001245 GO:0004672|GO:0006468
Phco10g01016 431 PANTHER OS01G0750732 PROTEIN 4 389 - -
Phco10g01016 431 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01016 431 CDD STKc_IRAK 119 378 - -
Phco10g01016 431 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 188 - -
Phco10g01016 431 SMART serkin_6 113 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01016 431 MobiDBLite consensus disorder prediction 409 431 - -
Phco10g01016 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Phco10g01016 431 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 398 - -
Phco10g01016 431 Gene3D Phosphorylase Kinase; domain 1 82 188 - -
Phco10g01016 431 SUPERFAMILY Protein kinase-like (PK-like) 102 393 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01016 Phco-Chr10 30658030 30661117 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Phco10g01016 PK_Tyr_Ser-Thr 5.2e-53 CL0016