Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00980 ATGGAAGGCTTTACCTTGCTTCTGTTCGGCCTTGCCGTGCTGAAAACTATAGCAGCCGCTACTCTGAGAGATACTATTAATACCTTGCAACCTATCAATGATGGGCAGATCATAGTTTCAGCTGGAGAAGTCTTTGCATTAGGATTCTTCAGTCCAAGCAATTCAAAAGGCCGTTATCTTGGAATTTGGTACTACAAAATCCCAATACAAACTGTAGTATGGATTGCCAACAGAGACAACCCTCTTACTGACTCTTCAGGGGTTTTGAAGCTCAATGAAACTGGACTTCTAGTCCTTCTCAACCATAACAAGAGTGTCATCTGGTCTTCCAGCACAACAAGGTCAGCACATTATCCTATTGGAAAGCTTTTGAATTCTGGAAATTTCATTGTGCAGGATGGAAACAACAATAATGAACCAAAAGATTTGCTGTGGCAAAGTTTTGATTATCCTGTAGACACATTCTTGCCACAACAGAAGTTAGGAAGAAATTTAATTACGGGCCTCAATCGATATCTATCATCATGGAATACCTCTGATGATCCTTCCCGAGGTAAATACAGTCATCAAATTGATACTGCTGGATATCCACAATTTGTTATCAGAGAAGGCACAGTCAAAAGATTTCGGTTTGGATCTTGGAATGGTATTCAGTTTAGTGGGGCACCTCAGGTGAAACAGAATAGTATATTTAGATTCATTTTTGTCTCTAATGAGGAAGAGATATATGTTAAATATGACCTTATCAACAAGTCAGTTCTCCATAGGTTGGTATTAGCAACAGATGGATTTCTCACTGGCATTAGTTGGAGTTATGAAGAAAATGTTTGGAGAGAGTTCGCAAGAGTTCCTGTGGATGACTGCGATTACTATGAAAAATGTGGAGCACATGCTAAGTGTAATATAAACAATTTCCCTCCATGTAATTGCTTGGAAGGATTTGTGCACAGTAGGCAATATACAAATGGTGGTTGTGTGAGGAGAACTTCACTGAGTTGCTATGGAGATGGATTTTTAAAGTTTTCAGGGTTGAAATTACCTGACACAGAGAGGTCCTGGTTTGATAGAAGCATTAGCCTTGAGGATTGCAGGATATTGTGCATGAAGAATTGCTCATGTACAGCTTATGCAGCCTTGGATATCAGTAAAGAACCAACTGGGTGTTTAGTCTGGTTTAACGATCTGATCGACATAAAAGAATTCACTGAATCTGATCAAGATATATACATAAGGATGGCAGGGACAGAAGTAGAAGCTATTCAAAGTATGCAATCACATAAATCCAACATTAGGAAACAAAAGACTATTATCATAAGCTGTGTGTTGTCTATTGGAATTTTACTCCTATGCTTAACCTTCATCATTCATAGACAGTGGAGGACAAGGCAGAAAGGCAGAAAAATGAAAAGCGATCTAGAAGAAGATGCAAGTGTAACAAATGAGCACGGGAACGAAGATGTAGTAGAGTTACCAATGTTTGATTTGTCAATAATTAGGTCTGCGACGAATAACTTTACACTTGAAAATAAACTCGGGGAAGGTGGTTTTGGATCTGTTTATAAGTGTTCAAACTTTAGAATCTTACCTGAAAAAGAGTCCAACATGGCAACTTTTTTCGCAGATGAAAAGAAGAGCGTATTACTAGATTGGCCAAGGCGCTTGCACATTGTCAATGGGATTGCTAGAGGGCTTCTGTATCTTCATGAAGATTCAAGGCATAGAATAGTTCATAGAGATCTCAAAGCTGGGAATGTCTTGTTAGATTGTGAAATGAACCCCAAAATCTCAGACTTTGGATTGGCCAGAAGCTTTGGAGGAAATGAAACTGAAGCAAACACAAAGCATGTAGTTGGAACCTATGGCTATATGCCGCCAGAGTACATAATTGATGGAGCTTATTCAACAAAGTCGGATGTTTTCAGCTTTGGTGTGTTGATACTTGAGATAGTGAGTGGGAAGAAAAATAGAGGATTCGGTCATCAAGATAATCTTCTGGCACATGCATGGAGACTATTTACTGAAGGAAAATGCACTGAAATAGTTTATGCAACAATAAGAGATTCACTCAATCTATCTGCAGCTGTCAGATTAATTCATGTGGGGCTACTTTGTGTGCAACTATGTCCGGATGATAGGCCAAGCATGTCTTCTGTGGTTCTGATGCTGAGCAGTGAATCTACGTTGCCTCAGCCAAAATTGCCTGGACTTTTTACAACCAGGAACCTGGTTGGGGACAGTTCTTCATCAGTCAGCTATCAGCAATACTCAAATAATGACATGACAGTTAGCATAATGTCTGCTCGATAG 2307 0.394 MEGFTLLLFGLAVLKTIAAATLRDTINTLQPINDGQIIVSAGEVFALGFFSPSNSKGRYLGIWYYKIPIQTVVWIANRDNPLTDSSGVLKLNETGLLVLLNHNKSVIWSSSTTRSAHYPIGKLLNSGNFIVQDGNNNNEPKDLLWQSFDYPVDTFLPQQKLGRNLITGLNRYLSSWNTSDDPSRGKYSHQIDTAGYPQFVIREGTVKRFRFGSWNGIQFSGAPQVKQNSIFRFIFVSNEEEIYVKYDLINKSVLHRLVLATDGFLTGISWSYEENVWREFARVPVDDCDYYEKCGAHAKCNINNFPPCNCLEGFVHSRQYTNGGCVRRTSLSCYGDGFLKFSGLKLPDTERSWFDRSISLEDCRILCMKNCSCTAYAALDISKEPTGCLVWFNDLIDIKEFTESDQDIYIRMAGTEVEAIQSMQSHKSNIRKQKTIIISCVLSIGILLLCLTFIIHRQWRTRQKGRKMKSDLEEDASVTNEHGNEDVVELPMFDLSIIRSATNNFTLENKLGEGGFGSVYKCSNFRILPEKESNMATFFADEKKSVLLDWPRRLHIVNGIARGLLYLHEDSRHRIVHRDLKAGNVLLDCEMNPKISDFGLARSFGGNETEANTKHVVGTYGYMPPEYIIDGAYSTKSDVFSFGVLILEIVSGKKNRGFGHQDNLLAHAWRLFTEGKCTEIVYATIRDSLNLSAAVRLIHVGLLCVQLCPDDRPSMSSVVLMLSSESTLPQPKLPGLFTTRNLVGDSSSSVSYQQYSNNDMTVSIMSAR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00980 768 Gene3D - 18 148 IPR036426 -
Phco10g00980 768 Pfam Protein tyrosine and serine/threonine kinase 536 720 IPR001245 GO:0004672|GO:0006468
Phco10g00980 768 PIRSF SRK 530 768 IPR024171 GO:0004674
Phco10g00980 768 PIRSF SRK 2 523 IPR024171 GO:0004674
Phco10g00980 768 SMART blect_4 29 151 IPR001480 -
Phco10g00980 768 CDD PAN_AP_plant 329 413 - -
Phco10g00980 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 529 730 - -
Phco10g00980 768 SUPERFAMILY Protein kinase-like (PK-like) 488 738 IPR011009 -
Phco10g00980 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Phco10g00980 768 Gene3D Transferase(Phosphotransferase) domain 1 535 730 - -
Phco10g00980 768 ProSiteProfiles Protein kinase domain profile. 390 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00980 768 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Phco10g00980 768 Pfam Domain of unknown function (DUF3403) 723 768 IPR021820 GO:0004674
Phco10g00980 768 Pfam D-mannose binding lectin 71 176 IPR001480 -
Phco10g00980 768 ProSiteProfiles PAN/Apple domain profile. 333 413 IPR003609 -
Phco10g00980 768 CDD B_lectin 30 151 IPR001480 -
Phco10g00980 768 SMART ntp_6 333 412 IPR003609 -
Phco10g00980 768 Pfam PAN-like domain 334 398 IPR003609 -
Phco10g00980 768 Gene3D Phosphorylase Kinase; domain 1 475 534 - -
Phco10g00980 768 SMART serkin_6 505 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00980 768 Gene3D Hepatocyte Growth Factor 331 411 - -
Phco10g00980 768 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 713 - -
Phco10g00980 768 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 148 - -
Phco10g00980 768 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
Phco10g00980 768 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 182 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00980 Phco-Chr10 29668074 29672078 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00980 Pkinase 6.9e-27 CL0016