Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00978 ATGGAAAGATTTACCTTGCTTCTGTTCTGCCTTGCCTTCCTGAATACTATAGCAGCTGCCACTTTGAGAGAAACTATTAATGTATTGCAATCTATCAGTGAAGGCCAGATCATTGTTTCACCTGGCAAAACCTATGCACTTGGATTCTTCAGTCCAGGAAATTCCAAGAACCGTTATGTGGGAATTTGGTACAATGAGATCCCAACACAGACTGTAGTATGGGTTGCCAATAGAGACAACCCTCTTACTGACTCATCAGGGGTTCTGAAGCTCAATGAAACTGGAGTTCTTGTTCTTCTCAACCACAACAAGAGTGTCATCTGGTCTTCCAACACAACAGGTTCAGCACGACATCCGGTAGCAAAACTTTTGGATACTGGAAATCTCATTGTGCGGAATGGAAAGGGCAATGATGAGGAAAAGGGTTTACTGTGGCAAAGTTTTGATTATCCAGGGGACACAATCTTGCCAGGACAGAAGTTTGGAAGAAATCTAGTTAAAGGTCTGAATCGATACATGTCATCGTGGAATAGCTCTGAGGATCCATCTCATGGTGTATACATTTATCAACTTGATATCACTGGATATCCGCAGTTTGTTTTGAGAAAAGGAACTTCCAAAAGATATCGTTTTGGATCATGGAATGGTATTCAGTTCAGTGGGGCACCTCTGTTGAAACAAAGTGAATTTACAAGATTTCGTTTTATTTCTAACCAGGAGGAGTTGTATTTTATGTTTGAGCGCACCAACAAGTCAGTTTTACATAGGATGGTGTTAAACCAAGATGGTCGTATCCTGGGGACTTATTGGGATAATGAACGAAAAATTTGGAACTTGCATGCACGAATTCCAGTTGATGACTGTGATTACTACGGCAAATGTGGAGCCTATGCTAGCTGCAACATAGACAATATCCCTCCATGTAAATGCTTGGATGGATTTGTGCCCAAAACGGCTGACCTTTATGGTAGTTGTGTCAGGAGAACTTCACTGAGTTGTCATGAAGATGGGTTTTTGCGGGTTTCAGGGTTGAAATTACCAGACACAGAGAAATCCTGGTTTGCCAGAAATATGAGCCTTGAGGATTGTAAGTTGTTGTGCATGAACAATTGCTCCTGTACAGCTTATGCAGCATTGGATGTGAGTAATAGGACCAATGGGTGTTTACTCTGGTTTAATGATTTGCTTGACATAAGAAAATTGACCGATGTTGATGAAGATATATACTTAAGGATGGCTAGGACAGAAGTAGAAGCTATTGAAGGAAAGCAATTGCATAAATCCAACATCCGGAAGCAAGAGACTCTTTTCATAAGTTCTGTGTTGTTTGTTGGAATTTTAGTACTATGTTTAACCTTCATCCTTTATAGACGATTGAAGACACGGCAGAAAGGAAAGATGGAAGGTAATCTAGAAAGAGATGTGACTGTAATAAATGAGCACGAGAGTAAAGATCTAGAGTTACCCATGTTTGAGTTGTCTACAATTACTTCTGCAACCAATAACTTTTCACCTGACAACAAACTAGGGGAAGGTGGTTTTGGATCAGTTTATAAGGGCATCCTAGCCGATGGAGGAGAAATAGCTGTGAAGAGGCTCTCTATGAATTCCAAACAAGGACTTCCAGAGTTCAAAAATGAAGTTATGCATATTGCAAAGCTTCAGCACAGGAATTTAGTGAGGCTACTAGGGTACTGCCTTCAAGCAGGAGAAAGATTGCTTGTTTACGAATTTATGCCCAACAAAAGCTTGGATTCCTTCATATTTGATGAAAACAAGAGTATGTTACTAGATTGGCCAAGGCGCATGGTGATTATCAATGGGGTTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGGCATAGAATAGTTCATAGAGATCTCAAAGCCGGGAATGTTTTGTTAGATAGTGAAATGAACCCAAAAATCTCGGACTTTGGACTGGCTAGAAGCTTTGGAGGAAATGAAATCGAAGCAACAACAAAACATGTAGTTGGAACCTATGGCTATCTGCCACCAGAGTACATTATCGATGGAGCTTATTCAACAAAGTCAGATGTTTTCAGCTTTGGTGTGTTGATATTGGAGATAGTGAGTGGGAAGAGAAATAAAGGATTCTGTCATCAAGATAATCTGCTGGCACATGTGTGGAGAGTGTTTAGCGAAGGAAAATGTTCTGAAATAGTTGATGCAGCAATAACAGACTCACTCCATTTATCTGAAGCTCTAAGATCAATCCATGTGGGACTACTGTGTGTGCAACTATGTCCAGACGATAGGCCAAACATGTCATCAGTGGTTCTGATGCTGAGCAGCGAATCTGCAATGCCTCAGCCAAACTTGCCTGGATTCTTTACAAGTGCAAGTATGGTTGAAGATAGTTCTTCATCAAGCAGTCATAAACAATACACAAATAATGACATGTCACTCAGCATAATGTCTGCTAGATAG 2454 0.4051 MERFTLLLFCLAFLNTIAAATLRETINVLQSISEGQIIVSPGKTYALGFFSPGNSKNRYVGIWYNEIPTQTVVWVANRDNPLTDSSGVLKLNETGVLVLLNHNKSVIWSSNTTGSARHPVAKLLDTGNLIVRNGKGNDEEKGLLWQSFDYPGDTILPGQKFGRNLVKGLNRYMSSWNSSEDPSHGVYIYQLDITGYPQFVLRKGTSKRYRFGSWNGIQFSGAPLLKQSEFTRFRFISNQEELYFMFERTNKSVLHRMVLNQDGRILGTYWDNERKIWNLHARIPVDDCDYYGKCGAYASCNIDNIPPCKCLDGFVPKTADLYGSCVRRTSLSCHEDGFLRVSGLKLPDTEKSWFARNMSLEDCKLLCMNNCSCTAYAALDVSNRTNGCLLWFNDLLDIRKLTDVDEDIYLRMARTEVEAIEGKQLHKSNIRKQETLFISSVLFVGILVLCLTFILYRRLKTRQKGKMEGNLERDVTVINEHESKDLELPMFELSTITSATNNFSPDNKLGEGGFGSVYKGILADGGEIAVKRLSMNSKQGLPEFKNEVMHIAKLQHRNLVRLLGYCLQAGERLLVYEFMPNKSLDSFIFDENKSMLLDWPRRMVIINGVARGLLYLHQDSRHRIVHRDLKAGNVLLDSEMNPKISDFGLARSFGGNEIEATTKHVVGTYGYLPPEYIIDGAYSTKSDVFSFGVLILEIVSGKRNKGFCHQDNLLAHVWRVFSEGKCSEIVDAAITDSLHLSEALRSIHVGLLCVQLCPDDRPNMSSVVLMLSSESAMPQPNLPGFFTSASMVEDSSSSSSHKQYTNNDMSLSIMSAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00978 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 148 - -
Phco10g00978 817 CDD PAN_AP_plant 329 413 - -
Phco10g00978 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 182 IPR036426 -
Phco10g00978 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 779 - -
Phco10g00978 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Phco10g00978 817 CDD STKc_IRAK 509 771 - -
Phco10g00978 817 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Phco10g00978 817 CDD B_lectin 30 151 IPR001480 -
Phco10g00978 817 SUPERFAMILY Protein kinase-like (PK-like) 489 805 IPR011009 -
Phco10g00978 817 Gene3D Hepatocyte Growth Factor 331 410 - -
Phco10g00978 817 Pfam PAN-like domain 333 398 IPR003609 -
Phco10g00978 817 ProSiteProfiles Protein kinase domain profile. 503 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00978 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 762 - -
Phco10g00978 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Phco10g00978 817 Pfam D-mannose binding lectin 71 176 IPR001480 -
Phco10g00978 817 Gene3D - 18 148 IPR036426 -
Phco10g00978 817 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Phco10g00978 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 578 - -
Phco10g00978 817 Pfam Domain of unknown function (DUF3403) 772 817 IPR021820 GO:0004674
Phco10g00978 817 ProSiteProfiles PAN/Apple domain profile. 333 413 IPR003609 -
Phco10g00978 817 SMART blect_4 29 151 IPR001480 -
Phco10g00978 817 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Phco10g00978 817 SMART ntp_6 333 412 IPR003609 -
Phco10g00978 817 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Phco10g00978 817 SMART serkin_6 503 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00978 817 Pfam Protein tyrosine and serine/threonine kinase 506 717 IPR001245 GO:0004672|GO:0006468
Phco10g00978 817 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00978 Phco-Chr10 29627082 29630845 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00978 PK_Tyr_Ser-Thr 1.2e-44 CL0016