Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00941 ATGGAGAGCACCGACTCATCAACCGGTTCACAACAACAACCGCAATTGCCACCTGGGTTCCGGTTCCACCCCACTGACGAGGAGCTCGTCGTTCACTACCTCAAGAAAAAAACAGCTTCGGTTCCTCTTCCAGTCGCCATAATCGCTGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCGACGTTTGGGGAGCAGGAGTGGTACTTCTTTAGTCCAAGGGACAGGAAGTATCCGAACGGCGCGAGGCCAAACAGGGCGGCCACATCTGGGTATTGGAAGGCCACTGGGACTGATAAGCCTGTGTTGACCTCTGGGGGAACCCAGAAGGTTGGGGTGAAAAAGGCTTTGGTTTTCTACGGAGGGAAGCCCCCAAGAGGGATCAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCACAGGTCTCCCATGGAGCATGACAGGGAAGATTCAATGGAAGACATGATTGGAGGGATTCCTCCTTCGATCAACGTGGGCCACATGAGTGGGAGGTATCATCTTTCAAAGATGTCCACAGGGTACAGCAGTGCATTGCTGGAAAATGACCAGAACTTGTTGGAAGGGATGATGATAGGTAACGGATCAGTGATGAACACGAGTACTACTACTACTAATACTACACCTGGTGCCATGGCCTCAAACTCCAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCCAACACTTCTAAAAGAACACTCTCGTCGCTGTATTGGAATGATGAGGATGTGGCTGGCACCTCATCATCCAACAAGAGGTTCAATTTGGAAAGTGGGGACAACAATCATGGAAGTGTAGTGAGAACTGATCAAGATAATGGCACTGCCACCTCTATTGTCACTCTGCTTAACCAGCTCCCTCAAACCCCTTCATTGCACCAACAATCAATGTTGGGATCAATAGGCGATGGACTCCTTAGGACAACATATCAAATACCAGGAATGAATTGGCTCAAGGAAAGTGAAGCGCTCGAAGAGTCTGGAAGGTATCATGGTACATTGGGGAGTGCTCATGCTAGGAGTGTGAAAGGCATTAGTGGCTTAGAAAAAGGGATGTATACTTCGGTGTCTACTAAAGAGTTGAATGATTCCTTTGTTGAGCTATGTTATCGTGCTCTCTTTGTTGGAAAATGCTTGGGAACCAAGCTAATGCAGATAGGTTCCACAAAATTCAAGGGGCTGAAGTTTAAATTGATTTTAGATGAAGCTGACAATGCTCTTAGAGTAACTACTCCTAGTGCTGAGCGTGATGGGGACGACATAGTTAGCTTACATTAG 1428 0.4741 MESTDSSTGSQQQPQLPPGFRFHPTDEELVVHYLKKKTASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHDREDSMEDMIGGIPPSINVGHMSGRYHLSKMSTGYSSALLENDQNLLEGMMIGNGSVMNTSTTTTNTTPGAMASNSKAELSFVPTMTHSSNTSKRTLSSLYWNDEDVAGTSSSNKRFNLESGDNNHGSVVRTDQDNGTATSIVTLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWLKESEALEESGRYHGTLGSAHARSVKGISGLEKGMYTSVSTKELNDSFVELCYRALFVGKCLGTKLMQIGSTKFKGLKFKLILDEADNALRVTTPSAERDGDDIVSLH 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00941 475 MobiDBLite consensus disorder prediction 1 21 - -
Phco10g00941 475 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Phco10g00941 475 PANTHER NAC TRANSCRIPTION FACTOR 56 16 214 - -
Phco10g00941 475 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Phco10g00941 475 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Phco10g00941 475 FunFam NAC transcription factor 56 25 182 - -
Phco10g00941 475 MobiDBLite consensus disorder prediction 1 18 - -
Phco10g00941 475 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Phco10g00941 475 MobiDBLite consensus disorder prediction 296 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00941 Phco-Chr10 27836759 27844067 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco10g00941 NAM 4.8e-39 No_clan