Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00904 ATGTCTTCAAGCTACAGACATGTCTCCCTGATCTTCACTTTTTGCTTTCTGGCTTTGAATCACTTTCAACACTTTGGATCTAATGCTCAACTCATACCACAAAATGAAGTTAAAATACTCCAAGCAATATCAGACAAGGTGGAGAACTTGAATTGGAAAGTTACACAACGTTCCTGCAAAGGGGATAGAGGGTTTGATAACAGGAAGATTTCAAGGGATGAGGAACAAATCATAAGGAATGTCACTTGCGATTGTTCTTTCAATGATGGCACTGTTTGCCATGTAACATCCATTGCACTCAAGGGTATCAATATATCTGGACCTTTACCCGATGAATTTGGAAATCTAACTCGACTGCAAATACTTGATCTCACTCGGAATTATTTTAATGGCTCAATTCCAAAAGCCCTTGGACGCCTCTCATCAGTTGTAGTTCTGTCACTTCTGGGAAACCGACTTACTGGTTCAATTCCTTCAGAAATTAGTGATATGACTAGTCTGCAAGAACTGAACTTGGAAGATAATCAACTTGAAGGACATCTTCCCCCAAGCCTTGGAAAAATGAGCAATTTGCTGAGACTACTTCTCTCCGCAAATAATTTCACTGGGACGATACCAGAAGCATATGGAAAACTAAAGAATCTCACTCAGTTTAGGATAGATGGGAGCACTTTGTCTGGGAAGATACCCAGTTTTATTGGGAACTGGACCAAACTTGATAGACTGGATTTGCAGGGCACATCCTTGGAAGGTCCAATTCCTTCTGTCATATCTGAATTGATCTATTTGACAGAACTGAGAATATCTGATTTGAAGGGACCAACCATGACATTTCCTAATCTGACGAATATGAAAATCTTGCAAAGACTAGAATTGAGAAATTGCTTAATTACTGGTCAGATTCCTAGTTACATTGGAGAAATGCAAAGTTTAAAAACTCTAGATCTGAGCTCCAACATGCTGACTGGTCCAATCCCGGATTCGTTACAGGACATGGAAAAAATAAATTACTTGTTTCTAACTAACAATTCTCTAAGTGGACGAATTCCTGATTGGATACAAGACTTCAAACAGAACATTGATTTATCTTTGAACAATTTTAGTGAGAGTTTTTCAAATGGTTGCCAGATCTTGGATGTGAACTTAGCTTCAAGCCTCACTCCCTCAGCAAACACTTCATCGTCTTGTTTGAAGATGGGGCAACCTTGTTCTGGAAAACCCCGGTCTCATTCACTGTTCATAAACTGTGGAGGACCTGAAATAGAGTTTGAGGGCAATGAATATAAAGCCGACCTCAGTCTACGAGGCATATCAAACTATGTTCTTAGTGATGATGGCAAATGGGCATATAGCAGCACTGGAGTATATCTAGGAAGGGATAAGGCTGATTATGTAGCAAAAAATCAGTTTAATCTGAATATTAATGGCTCTGAATACTACCAAACAGCCCGCATGGCCCCACTATATCTTAATTATTATGGTCTTTGTATGCTGAATGGCAATTATAAAGTGAAACTTCATTTTGCTGAGATAACATTCTCTGATGACAATGCATTTACCAGCCTTGGAAAGCGTATATTTGATGTTTCAATCCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGAAAGAAGCTGGTGGAGTTGGTAAGGGAATCACCAGGGAGTTTAATGTGAATGTTACCTACAACACCTTGGAAATCCACTTATCCTGGGCAGGTAAAGGAACTAATGCTATTCCTGTAAGAGGTATATATGGACCTCTTATATCCGCTATCACTGTGACCCCAAACTTTAAAGTTCCTTCACATGGGCTGTCTACTGGAGCAATTGCTGGAATTGTGGTTGGGATATGTGTGTTCATCTTATTGATACTCCTTGCACTATGGAAGATGGGTTTCCTTTGTGGGAAAGATGAAACAGACCAAGAACTTATAGGTTTGAAGACAGGTTATTTCAGTTTGAGACAGATTAAAGCTGCTACTAAGAACTTTGATCCAGCAAATAAGATAGGTGAAGGAGGCTTTGGACCAGTATACAAGGGTGTACTGTCAGACGGTGCTGTGATTGCTGTTAAGCAGCTTTCCTCCAAATCAAAGCAAGGGAATCGCGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCGAATCTTGTGAAACTTTATGGCTGTTGCATTGAAGGGAACCAGTTGCTTCTAGTATATGAATACATGGAGAACAATAGTCTTGCTCGTTCACTTTTTGGTAAAGAACACGAGAGGATGCAATTGGACTGGCCCAGAAGAATGAAGATTTGTGTGGGGATTGCAAAGGGATTAGCTTATCTCCATGAGGAGTCAAGGTTGAAAATAGTACACAGGGATATTAAAGCAACCAATGTCTTACTGGATAAGCATATGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTCGATGAAGAAGAGAATACCCATATTAGTACAAGAATAGCTGGAACAATTGGTTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGTGTTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTGTATCTTTTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGATTTGGTGGATCCAAGTCTTAGTTCAAAGTACTCCTCAGAAGAGGCCATGAGAATGCTGCAGTTAGCACTCTTGTGCACCAATCCTTCTCCCACTCTTAGACCACCTATGTCATCCGTAGTGAGCATGCTTGAGGGAAAAACTCCAATTCAACCACCACCAATAATCAAAGGCAGTGACTATGCACAAGATGCGAGATTTAAATCTTTTGAGTTGCTATCACAAGACAGCCAAACTCATGTCTCTTCTGCTTTCTCACAAGATAGCATAGAGCAAAGAAGCAAGTCAATGGGGGGACCATGGGCTGATTCCACCATATCTCTGGCAAGTAGAACCGATCATTCTTCTAGCGATAAACTTCTTAGAAGTTCAAATGACGAGTGCTTCGAAGTTGGGGCAGTCAACTCATTAAATTCAAATTCTTTTGTTAAGGATATGAACAAAAACCAGTTAGGTTGA 3135 0.4006 MSSSYRHVSLIFTFCFLALNHFQHFGSNAQLIPQNEVKILQAISDKVENLNWKVTQRSCKGDRGFDNRKISRDEEQIIRNVTCDCSFNDGTVCHVTSIALKGINISGPLPDEFGNLTRLQILDLTRNYFNGSIPKALGRLSSVVVLSLLGNRLTGSIPSEISDMTSLQELNLEDNQLEGHLPPSLGKMSNLLRLLLSANNFTGTIPEAYGKLKNLTQFRIDGSTLSGKIPSFIGNWTKLDRLDLQGTSLEGPIPSVISELIYLTELRISDLKGPTMTFPNLTNMKILQRLELRNCLITGQIPSYIGEMQSLKTLDLSSNMLTGPIPDSLQDMEKINYLFLTNNSLSGRIPDWIQDFKQNIDLSLNNFSESFSNGCQILDVNLASSLTPSANTSSSCLKMGQPCSGKPRSHSLFINCGGPEIEFEGNEYKADLSLRGISNYVLSDDGKWAYSSTGVYLGRDKADYVAKNQFNLNINGSEYYQTARMAPLYLNYYGLCMLNGNYKVKLHFAEITFSDDNAFTSLGKRIFDVSIQGFKYLKDFNIVKEAGGVGKGITREFNVNVTYNTLEIHLSWAGKGTNAIPVRGIYGPLISAITVTPNFKVPSHGLSTGAIAGIVVGICVFILLILLALWKMGFLCGKDETDQELIGLKTGYFSLRQIKAATKNFDPANKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARSLFGKEHERMQLDWPRRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHMNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLSSKYSSEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGKTPIQPPPIIKGSDYAQDARFKSFELLSQDSQTHVSSAFSQDSIEQRSKSMGGPWADSTISLASRTDHSSSDKLLRSSNDECFEVGAVNSLNSNSFVKDMNKNQLG 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00904 1044 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Phco10g00904 1044 Gene3D Transferase(Phosphotransferase) domain 1 741 943 - -
Phco10g00904 1044 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 216 IPR000225 GO:0005515
Phco10g00904 1044 SMART LRR_typ_2 164 188 IPR003591 -
Phco10g00904 1044 SMART LRR_typ_2 308 331 IPR003591 -
Phco10g00904 1044 SMART LRR_typ_2 116 140 IPR003591 -
Phco10g00904 1044 Gene3D Phosphorylase Kinase; domain 1 635 740 - -
Phco10g00904 1044 ProSiteProfiles Protein kinase domain profile. 665 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00904 1044 Gene3D Ribonuclease Inhibitor 51 209 IPR032675 -
Phco10g00904 1044 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 33 272 - -
Phco10g00904 1044 Pfam Protein tyrosine and serine/threonine kinase 669 935 IPR001245 GO:0004672|GO:0006468
Phco10g00904 1044 MobiDBLite consensus disorder prediction 975 1006 - -
Phco10g00904 1044 Gene3D - 409 598 - -
Phco10g00904 1044 Gene3D Ribonuclease Inhibitor 211 274 IPR032675 -
Phco10g00904 1044 Pfam Leucine rich repeat 287 345 IPR001611 GO:0005515
Phco10g00904 1044 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Phco10g00904 1044 Gene3D Ribonuclease Inhibitor 275 399 IPR032675 -
Phco10g00904 1044 Pfam Malectin domain 412 593 IPR021720 -
Phco10g00904 1044 CDD STKc_IRAK 671 938 - -
Phco10g00904 1044 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 740 - -
Phco10g00904 1044 SMART serkin_6 665 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00904 1044 FunFam Putative LRR receptor-like serine/threonine-protein kinase 741 946 - -
Phco10g00904 1044 SUPERFAMILY Protein kinase-like (PK-like) 649 937 IPR011009 -
Phco10g00904 1044 MobiDBLite consensus disorder prediction 975 1012 - -
Phco10g00904 1044 SUPERFAMILY L domain-like 91 354 - -
Phco10g00904 1044 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 409 598 - -
Phco10g00904 1044 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 278 371 - -
Phco10g00904 1044 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00904 Phco-Chr10 24415176 24425868 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00904 PK_Tyr_Ser-Thr 1.7e-50 CL0016