Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00860 ATGTACTCAAATACCCTCCTCCCAACCCTCATCTTCATCATTCTCCGCTATGAGATATACAGCATTGCAATCTGGCTCAGGAATCATAAAAGGGAGGTAGCTAAAGCTAGGCCAATGAAGAGGAGCAGTTTGATGAAAGACTACACTCACAGTTGTGCCAACAAGAACCCAACAAAAGACTTCACCCATGTTGCCAACTGCTACAACAAGCAGAACCAGATGGCTAAAGATTTATGGGAGTGCAGCAGCAACTCTCATAGCAATGCAGATCAGGACTATGTGAATGGCTTCCCATGGCCTCCAAGATCATACACTTGTAGTTTCTGCAGGAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACATATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCAGCTGAAGGTCAAGGCCATATGTTCAACCTTAATCTTGACCCTACTACAACAAACCCTAACAACTCAACCTCATCTTGGTCCTTGTTACCATCATCTTCATCTTCAGCGACTCACAAACCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCCACTCCTTCTTCACCTTCTTCTGAGTTGAAGAGATGGGTTGTTGTTGATGGCATTCTGTTGAACCCTTTGAGCACAAAGACTCCAGAGCACTCTATGTCAAAGATTCCAGAATCTTTATCAGGCGGGGTTGTAGAATATGATCATGTTTTTGCAAGAGAAGATGGGTGCAAAGTGTTGAAGAAAGGAGAGATTCTGAGGATGGACTTGGAGATAGGTTTGCCTAGAAGTTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 840 0.4429 MYSNTLLPTLIFIILRYEIYSIAIWLRNHKREVAKARPMKRSSLMKDYTHSCANKNPTKDFTHVANCYNKQNQMAKDLWECSSNSHSNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPAEGQGHMFNLNLDPTTTNPNNSTSSWSLLPSSSSSATHKPVTCTLPLFVSPTPSSPSSELKRWVVVDGILLNPLSTKTPEHSMSKIPESLSGGVVEYDHVFAREDGCKVLKKGEILRMDLEIGLPRSYDLDLELRLGTTYS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00860 279 Pfam C2H2-type zinc finger 104 128 - -
Phco10g00860 279 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Phco10g00860 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Phco10g00860 279 SUPERFAMILY beta-beta-alpha zinc fingers 101 130 IPR036236 -
Phco10g00860 279 SMART c2h2final6 104 126 IPR013087 -
Phco10g00860 279 MobiDBLite consensus disorder prediction 134 167 - -
Phco10g00860 279 MobiDBLite consensus disorder prediction 147 167 - -
Phco10g00860 279 Gene3D Classic Zinc Finger 100 145 - -
Phco10g00860 279 PANTHER OS07G0101800 PROTEIN 79 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00860 Phco-Chr10 18905002 18905970 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g00860 zf-C2H2_6 1.8e-06 CL0361