Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00854 ATGAAATCACAGGCACAGTTTCCAGAAAAGATATCAGGGCAGGCACCTAATCAATCAGGGTCTCAGTTGCCTGGCCTTATTCAACTGAATGGAAATGCCCTGCATCAGATGCCAAATTTAGGTGTTTTTCCAACTATGGACCCTGAATTTATTAGAGCTCGGTCTTTTACGCTAGAAAAAATATGTAATATATTATTGCAGCGGTACCAGCATCCAGTTACTGAAGCACATAAAAGGAAGGTTAAGGATCTTGCAAAACGTCTCGAAGAGGGCATGTTAAAAACTGCTATATCTAAGGAGGACTACATGAACTTAGACACGCTAGAGAGTCGCTTATCTAATTTCCTTAGAATGTCATCTATGACTACTCACAACCAACATCCTCAGATTGTTAGCTCTTCTCCAATTGCTACAATGATACCAACCCCTGGTATGTCACATGTTACAAATTCAACCATGATCACGGCATCTTCTGTGGATACCTCAATGATTGCTGCCAGTGGATGCAACAGTATAGCATCTCCTTCTGTCAATAGTGTAAGCATGTTACCAGCAGGTGGCATGCTTGGCAGCACCTTAAACAGATCTGATGGATTGTCTAATGGTTACAAGCAGTCTTCTACAAGTTTTTCCATTGGTTCAGGAGGAAATATGGCATCGGTTGGGTTGCAAAGAGTTACTAGTCAGATGATTCCAACTCCAGGATTTAGTGTCAGCAATAATCATTCGTATACAAATATGGAAACTTCAAGTAACAACAGTTCTTTTTCCGGTGTTGATTCTACATTACTATTGCCATCACAGTCACAGCAGCAGCAGCAGCAGCAGCGGCACCAGAAGCTGCAAGATAGTGACCACAACAATCATACATTGCACAACCTTGGCAGTCAAATTGATGGTGGAAGAAGATCTGATTTACTGCAAAACACATTTGCATATCCAAATGGTTCTATAAATAGTGGGCTAGGTTTGATTGGAAACAGCATACAAATTGCAAACGAACTAGGCACTGATGACTACACTTCAGCATACTCTAATTCCCCTAAAAACTTACAGCAGCTCTTTGATCAAAATCAACAACCAGTAGTGCAGGGTGACAGATATGGATTGATTAATGTTGACACGTTTACTTCTGGAAGCTTTTATGCATCTGCGACATCCTCTGGTTCTATGTTGAACACTCAGAACATGAATGCTGTAAAATTGCCATCAATACCCATTTCCAGCTCACTCATAAGTGGTCATTCAAATTTGCTCAGTATGAATCATACTGCTCATCACAACTCTCAAGCAATAAATTCGTTGAAAAATTTAAAATTCCAGTCTTCCCTGACTTCAAGAAATGACCATGTAAATACTCAACATCAATATGAGCAAAGACCCCAACAATGTCACCAGTCAGATTGGTATGCTCCTCAGCAATTTCAGCTGAATCCACTAAGTCAGCAACCTCAGCATTTGGTCAACAATGATGCCTTCCCTCAGTCTCAACTCTCTTCCAGTCTAGACAATCACGTAAAGTCCGAGCCTGGTGTTGAACCACAGAAAGAAATTCTCAATTCTCAGTTTTCTGAGCAGTTCCATGTTTCTGAAATGCAGAACCAGTTCCAACAGATTTCTTCTAAAGATCGCTCTAAGGTTGCTCAGCATGTTTCATTGGATGAGCACAACTCATCAGCATCACCACCTCAAATTTCTCAACATCCTTATCAATTGATTTCAGAGTCTCAAAATAATTTTAACTTTGTTTCAGTTGGGTCACAATCCAAATCCATGCTTAAAAATCAGTGGCCTCGATCACAAGATGAGAACGATGTTCCTAAGGGTATGTCACATGAACAACATTTTCCCCTTGATTTTCATCAAAGAATACCAAGGCAAGATGAAGCTCAATGCAGTAAGTTACCATTAGATGGATCTATTATTGGTCAAGCTGTTGCCTCTAGAAGCTCTGTTGAGCTGCTAGACCCAAGCAGTTCTAAAGAGAAGGAACACAGAAATCAACAGAAGTGGCTTTTATTTTTATTTCATGCTCGACACTGTTCTGCCCCAGAAGGGCGATGCCAAGAACGCCATTGTTCAATTATGCAGAAGTTATGTGATCACGTAGATGGATGCATTATATCTCATTGTCCATATCCTCGTTGTCATCATACCAGGAAATTGCTACGTCATTTCATAAAATGCAGGAATCCGCATTGCCCTGTTTGCGTTTTAGTAAGAAAGTACCGGCATGCATTTCAACTTAAGCCCCAAATTCAGTCAGAACCTGAACCATGTTTACCAATTGCTTTAAATGGATCCTGTGAAACCTTTAATGTGGTGGGACCATCTCCTAGATTTATCACCAAGTCTCAACCAGTGGCTGAAACTTCAGAAGACCTACCAGCTCCAAAGCGTACGAAAACTGAGCAATACACCAAGTCCATTAATCCTGGATATGATAATGCTGCTTTATCTGCTCTTCCAAACTGTGAATTAAGAGATTCGAAGGATACTCAGTGCCATTCCTATTCCTGTGGGGATATGTCTGTATCAATTAAATCTGAGCTTAACGAAGTTAAAGCAGAAGTTCTGGTGCATTCAGTGCATGAAAATCCCAGTGAGACAAGAATGGAGGAGGATAATGCACATGATAAAAGGCCCACTGGTAAGCCTCTCACATACACTGAGCCAACTAGTATAGCTAGGCCGGAGAATATTAAAACTGAGAAAGAAAGTGGTCAGGATAAGCAAGAAAATGTGACCCAGCCATCTGAACCTGGAGCTGGAACCAAGTCTGGTAAGCCAAAAATAAAGGGGGTCTCATTGACTGAGCTGTTTACTCCTGAGCAAGTCAGGGAACATATCACTGGCCTCAGGCAATGGGTTGGCCAAAGCAAATCAAAGGCAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAATTAACTTTTGAACCACCCCCTATTTATTGCACAACTTGTGGTGTTCGGATTAAACGCAATAATATGTATTATACAATGGGTACGGGTGATACACGACATTATTTTTGTATTCCGTGCTACAATGAGCCTCGTGGAGACACCATTGTTGTTGATGGGACTTCTTTTCCTAAGTCAAGGTTAGAAAAGAAGAAAAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGCGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTGAATACACTTGCCCTAACTGCTATATTCAAGAAGTAGAAAGAGGTGAGCGCAAGCCCTTACCCCAAAATGCTGTTCTTGGAGCCAAGGATTTACCCAGAACAATTCTCAGTGACCAAATAGAGCAACGATTATTTAGGAGACTAAAGCATGAGAGACAAGAGAGGGCCCGACTTCAAGGGAAAAATTATGATGAGGTGCCTGGAGCTGAATCTCTTGTTATAAGGGTTGTGTCATCTGTTGACAAGAAGTTAGAAGTTAAACAGCGGTTTTTAGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTCCCATACAAATCGAAAGTAGTTTTGTTGTTTCAGAAGATTGAAGGGGTTGAGGTTTGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAAAGTAAATTTCCAAATCAGCGCCGGGTTTATCTTTCATATTTGGACTCTGTTAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGAACCTTTGTTTATCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTTACTAGCTGCTACATTTGGGCTTGTCCTCCACTGAAGGGTGAAGATTATATTTTATATTGTCATCCCGAAATTCAGAAAACACCAAAATCTGATAAGCTTAGGGAATGGTACCTTGCTATGTTAAGAAAAGCTGCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGACCACTTCTTTGTGTCTTCTGGTGAATGTAGGGCTAAGGTTACAGCTGCAAGGCTCCCATATTTTGATGGTGACTATTGGCCTGGGGCTGCCGAGGATTTGATTTATCAGCTTCGCCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCACAAAAGATCTTCTCCTAATGCACAAACTCGGTGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCAGTCATTGTTGTATTCTAATGGTGTCAGGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATTTGTGACAAGTGTTATGAAGCAGAACTCAAGCGTGAAGAAAGAGAACGACATCCTATTAACCAGAGGGAGAAACACACCCTTTATCCTGTAGAAATTATTGATGTACCTGCTGATACAAAGGACAAAGATGAGATTCTTGAGAGTGAATTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGCCAGGGAAATCATTATCAATATGATACTCTAAGGCGGGCCAAGCATTCCTCTATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACTACATGTAATATTTGCCGTCTTGACATAGAAACAGGTCAAGGTTGGCGTTGTGAAGTCTGCCCTGAATATGATGTGTGCAATGCTTGCTATCAAAAGGATGGTGGCACTGATCATCCTCATAAATTGACAAACAATCCATCAATGGCAGATCGTGATGCTCAGAACAAGGAAGCTAGACAAGTTCGAGTATTACAGTTGCGAAAAATGCTTGACCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCATTGCCAATATCCAAATTGTCGCAAGGTGAAGGGGCTTTTCCGTCATGGAATGCATTGCAAAACACGTGCCTCCGGAGGTTGTGTTCTATGTAAGAAAATGTGGTATTTGCTTCAACTACATGCTCGTGCATGCAAGGAATCTGAATGCCATGTACCACGTTGCAGAGATTTAAAAGAACACTTGAGGAGGTTGCAGCAACAGTCTGATTCACGGCGAAGAGCAGCTGTAATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCAAACAATTCTGGATGA 5184 0.4109 MKSQAQFPEKISGQAPNQSGSQLPGLIQLNGNALHQMPNLGVFPTMDPEFIRARSFTLEKICNILLQRYQHPVTEAHKRKVKDLAKRLEEGMLKTAISKEDYMNLDTLESRLSNFLRMSSMTTHNQHPQIVSSSPIATMIPTPGMSHVTNSTMITASSVDTSMIAASGCNSIASPSVNSVSMLPAGGMLGSTLNRSDGLSNGYKQSSTSFSIGSGGNMASVGLQRVTSQMIPTPGFSVSNNHSYTNMETSSNNSSFSGVDSTLLLPSQSQQQQQQQRHQKLQDSDHNNHTLHNLGSQIDGGRRSDLLQNTFAYPNGSINSGLGLIGNSIQIANELGTDDYTSAYSNSPKNLQQLFDQNQQPVVQGDRYGLINVDTFTSGSFYASATSSGSMLNTQNMNAVKLPSIPISSSLISGHSNLLSMNHTAHHNSQAINSLKNLKFQSSLTSRNDHVNTQHQYEQRPQQCHQSDWYAPQQFQLNPLSQQPQHLVNNDAFPQSQLSSSLDNHVKSEPGVEPQKEILNSQFSEQFHVSEMQNQFQQISSKDRSKVAQHVSLDEHNSSASPPQISQHPYQLISESQNNFNFVSVGSQSKSMLKNQWPRSQDENDVPKGMSHEQHFPLDFHQRIPRQDEAQCSKLPLDGSIIGQAVASRSSVELLDPSSSKEKEHRNQQKWLLFLFHARHCSAPEGRCQERHCSIMQKLCDHVDGCIISHCPYPRCHHTRKLLRHFIKCRNPHCPVCVLVRKYRHAFQLKPQIQSEPEPCLPIALNGSCETFNVVGPSPRFITKSQPVAETSEDLPAPKRTKTEQYTKSINPGYDNAALSALPNCELRDSKDTQCHSYSCGDMSVSIKSELNEVKAEVLVHSVHENPSETRMEEDNAHDKRPTGKPLTYTEPTSIARPENIKTEKESGQDKQENVTQPSEPGAGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTSFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQNAVLGAKDLPRTILSDQIEQRLFRRLKHERQERARLQGKNYDEVPGAESLVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSESKFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSSGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNATKDLLLMHKLGETISPMKEDFIMVHLQHACSHCCILMVSGNRWVCRQCKNFQICDKCYEAELKREERERHPINQREKHTLYPVEIIDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICRLDIETGQGWRCEVCPEYDVCNACYQKDGGTDHPHKLTNNPSMADRDAQNKEARQVRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNSG 1727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00854 1727 ProSiteProfiles Zinc finger ZZ-type profile. 1429 1492 IPR000433 GO:0008270
Phco10g00854 1727 MobiDBLite consensus disorder prediction 530 565 - -
Phco10g00854 1727 MobiDBLite consensus disorder prediction 232 301 - -
Phco10g00854 1727 MobiDBLite consensus disorder prediction 1375 1398 - -
Phco10g00854 1727 ProSitePatterns Zinc finger ZZ-type signature. 1554 1581 IPR000433 GO:0008270
Phco10g00854 1727 FunFam Histone acetyltransferase HAC1 1548 1599 - -
Phco10g00854 1727 MobiDBLite consensus disorder prediction 862 933 - -
Phco10g00854 1727 SUPERFAMILY TAZ domain 1611 1694 IPR035898 -
Phco10g00854 1727 ProSiteProfiles Zinc finger TAZ-type profile. 1609 1692 IPR000197 -
Phco10g00854 1727 FunFam Histone acetyltransferase HAC1-like protein 1606 1723 - -
Phco10g00854 1727 SMART zz_5 1428 1472 IPR000433 GO:0008270
Phco10g00854 1727 SMART zz_5 1548 1594 IPR000433 GO:0008270
Phco10g00854 1727 SUPERFAMILY TAZ domain 661 743 IPR035898 -
Phco10g00854 1727 ProSitePatterns Zinc finger PHD-type signature. 1022 1093 IPR019786 -
Phco10g00854 1727 FunFam Histone acetyltransferase of the CBP family 12 1425 1484 - -
Phco10g00854 1727 SUPERFAMILY RING/U-box 1530 1595 - -
Phco10g00854 1727 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1111 1547 IPR031162 GO:0004402
Phco10g00854 1727 ProSiteProfiles Zinc finger TAZ-type profile. 660 740 IPR000197 -
Phco10g00854 1727 Pfam Histone acetylation protein 1151 1372 IPR013178 GO:0004402|GO:0006355|GO:0016573
Phco10g00854 1727 Gene3D - 1425 1484 IPR043145 -
Phco10g00854 1727 Gene3D - 1548 1599 IPR043145 -
Phco10g00854 1727 SMART KAT11_2 1144 1441 IPR013178 GO:0004402|GO:0006355|GO:0016573
Phco10g00854 1727 PANTHER CBP/P300-RELATED 80 1718 IPR013178 GO:0004402|GO:0006355|GO:0016573
Phco10g00854 1727 Gene3D TAZ domain 1606 1723 IPR035898 -
Phco10g00854 1727 CDD PHD_HAC_like 1021 1093 - -
Phco10g00854 1727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1046 1094 IPR013083 -
Phco10g00854 1727 Gene3D TAZ domain 656 745 IPR035898 -
Phco10g00854 1727 SUPERFAMILY FYVE/PHD zinc finger 1055 1095 IPR011011 -
Phco10g00854 1727 Pfam Zinc finger, ZZ type 1551 1592 IPR000433 GO:0008270
Phco10g00854 1727 SMART TAZ_2 1612 1690 IPR000197 -
Phco10g00854 1727 SMART TAZ_2 662 740 IPR000197 -
Phco10g00854 1727 MobiDBLite consensus disorder prediction 1 26 - -
Phco10g00854 1727 Pfam TAZ zinc finger 669 737 IPR000197 -
Phco10g00854 1727 Pfam TAZ zinc finger 1619 1689 IPR000197 -
Phco10g00854 1727 MobiDBLite consensus disorder prediction 232 278 - -
Phco10g00854 1727 SUPERFAMILY RING/U-box 1409 1481 - -
Phco10g00854 1727 MobiDBLite consensus disorder prediction 862 885 - -
Phco10g00854 1727 Pfam PHD-finger 1052 1094 IPR019787 -
Phco10g00854 1727 ProSiteProfiles Zinc finger ZZ-type profile. 1549 1608 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00854 Phco-Chr10 17311793 17337601 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Phco10g00854 HAT_KAT11 1.7e-31 CL0257