Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00845 ATGTCGCTGAGGAAGGTCTTTCGCTCCCGCAAATTCTCGAGATCGTTCAAGGAGGCGCCGGCGGTGGGGACCGCCGAGGGTGGGATCACCGGAAACGGGGGCGAACACGCGCACGAAAATGGGTGGTCCAACATGCTGCCGGAGATCCTCTGCGAGATCGTGCGGCGCGTTGACGCCGCCGAGGAGCAGTGGCCGAACCGCCAGAACGTAGTGTCGTGCGCGTGCGTGTGCAAGCGCTGGCGCGACATCACGCGTGAGGTCGTGCGAGAGCCTTTGCACACCGGGAAAATCACTTTCCCTTCGTGCCTTAAACAGCCCGGACCACGTGAGGTTCCCCACCAGTGTCTTATAAAGCGGAACAAGAAGACCTCGACGTTTTATCTATATCTTGCCCTATCACCATCATTCACAGATAAAGGGAAGTTTCTGCTTGCAGCTAGGAGATATAGGTGTGGTACCCATACCGAGTATATAATTTCTCTTGATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACGATTTATGACAGCCAGCCACCCCATAGTGGTGCGAGACCATCAAGTGGCAGGGCCAGTCGGCGGTTTGCCAGCAAGCAGATAAGCCCGCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTATCCTACAAGTTCAACCTGTTGAAATCAAGAGGGCCACGGAGAATGGTTTGCTCTTTGAAGTCTCCCGTGACTCCTACTGGTGAAAGTTCAGATAGCACATCTCTTGATGGCCATAAGATGCACGATAAAGAACACGCTGCTGCTTCCGGCTACACAATCTTGAAGAATAAAGCTCCCAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCCTCAGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCTGGAGGGAAAGGAGATGAGGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1119 0.5165 MSLRKVFRSRKFSRSFKEAPAVGTAEGGITGNGGEHAHENGWSNMLPEILCEIVRRVDAAEEQWPNRQNVVSCACVCKRWRDITREVVREPLHTGKITFPSCLKQPGPREVPHQCLIKRNKKTSTFYLYLALSPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGARPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVTPTGESSDSTSLDGHKMHDKEHAAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00845 372 Pfam Tub family 103 367 IPR000007 -
Phco10g00845 372 ProSitePatterns Tub family signature 2. 357 372 IPR018066 -
Phco10g00845 372 Gene3D Tubby Protein; Chain A 98 372 IPR025659 -
Phco10g00845 372 Pfam F-box domain 42 87 IPR001810 GO:0005515
Phco10g00845 372 MobiDBLite consensus disorder prediction 246 266 - -
Phco10g00845 372 SUPERFAMILY F-box domain 40 85 IPR036047 GO:0005515
Phco10g00845 372 PANTHER TUBBY-RELATED 36 370 - -
Phco10g00845 372 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Phco10g00845 372 PRINTS Tubby superfamily signature 350 372 IPR000007 -
Phco10g00845 372 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Phco10g00845 372 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Phco10g00845 372 PRINTS Tubby superfamily signature 329 348 IPR000007 -
Phco10g00845 372 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Phco10g00845 372 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Phco10g00845 372 Gene3D - 35 88 - -
Phco10g00845 372 ProSitePatterns Tub family signature 1. 300 313 IPR018066 -
Phco10g00845 372 SUPERFAMILY Tubby C-terminal domain-like 93 372 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00845 Phco-Chr10 14981973 14986344 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phco10g00845 Tub 1.6e-102 CL0395