Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00842 ATGTTTAGGGAGGTAATGTGGCACTGCTTTTATGTCTGTCCATTTTGTTACAGAGCCTTTGAATCTTTCTATATAAATTGTGGTGGTGAACAAGTGGACAATGAAGGTATTGTGTATGTTGGTGACAAAGATTTCTTAGGGGCAGCAACATCCGACTACACAGAAAACTGGGCAATTAGCAATACCGGTCATTTCTTGGATGATTCTGGTACTGAAGAAGAGTATATCCAGCAAATTAACACTGCGCCTTCTATGCCTACATTGTATCAGACTGCACGTGTATCCCCCATTTCTTTGACTTATTATGGAAGGTGTCTGGAAAATGGAAACTACACGGTATTGCTGCATTTTGCAGAGATCATGTTCACTGATGATAACACCTATAGCAGCCTAGGAAGACGCATATTTGATGTTTACGTTCAGGGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGCAGCAGGAGGAGTTGGGAAGAACATTACAAGACAAATTTCAACTATTGTGAGTAATAGCTCTTTAGAGATTCGTTTTTATTGGGCTGGAAAAGGAACAACTGACATCCCATATAAATCAGTATATGGCCCTCTTATATCAGCTATATCTGTCACTCGAGTAAACACTAGCAGAGGTGATCTTAGCATGGGTATAGGGGTTGTAATTGGGATAGCAGTTGCTGCAATTGTATTTGTCATCCTTATTGTACTTGGCTGGAGACTTCATACCGGGAAAAGAAATTCATTGGCAAAAGAGTTAAAGCATTTAAATTTGCAAATGGGTATGTTTACTATGCGTCAAATCAAAGTTGCAACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGCTTCGGTCCTGTCTACAAGGGTACTTTATCAGATGGCACAATAATAGCAGTTAAGAAGCTTTCATCAAAGTCAAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTATGGTTGTTGTGTTGAGGGAGATGAGTTGTTGCTGGTATACGAATATATGGAAAACAATAGCCTTTCACATGCTTTATTTAGAAATGGAGAATCTTGTTTGCAATTGGATTGGCCAACCAGGTATAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAGTTGTTCATAGGGACATAAAGGCTACTAATGTGTTGTTAGACAAAGACTTGAACCCAAAGATATCTGATTTTGGTCTTGCAAAGCTTGATGATGAGGACAATACTCACATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCTCCAGAGTATGCCATGCATGGTTATTTAACTGATAAAGCAGATGTGTATAGTTTTGGAGTGGTTGCCTTAGAAATTGTGACTGGAAAGACCAATACCATCCCTCGACCGAAGCAAGAAGCATTGCATCTTTTAGATTGGGCACATTTAGTGAAAGAGAAAGGGAATCTGATGGAGCTAGTTGATAGAAGGTTAGGATCAAATTTCAATGAAAAAGAGGTAATGATGACGATAAAAGTGGGTCTTCTGTGCACAAATTCCACTGCAAACCTTAGGCCTAGCATGTCATCGGTGCTTAGCATGCTTGAAGGAAAAACTGTGATTCCAGAATTTATTTCAGATTCATCTGAAGTAATGGATGAAATGAAGCTAGAGGCTATGAGACAATATTACTCTCAAATGGAAGAAAACGAGAGAAGTGAAACACATACAAGTCATAGTTCATCAAAAGATGGGCCATGGACTGCTTCATCTTCATCAGCTGCAGACCTATATCCTGTCCATATTGATTCTTCTTATTGGGAGAAAAGAAATTAG 1869 0.3847 MFREVMWHCFYVCPFCYRAFESFYINCGGEQVDNEGIVYVGDKDFLGAATSDYTENWAISNTGHFLDDSGTEEEYIQQINTAPSMPTLYQTARVSPISLTYYGRCLENGNYTVLLHFAEIMFTDDNTYSSLGRRIFDVYVQGKLELKDFNIANAAGGVGKNITRQISTIVSNSSLEIRFYWAGKGTTDIPYKSVYGPLISAISVTRVNTSRGDLSMGIGVVIGIAVAAIVFVILIVLGWRLHTGKRNSLAKELKHLNLQMGMFTMRQIKVATNNFDISNKIGEGGFGPVYKGTLSDGTIIAVKKLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGDELLLVYEYMENNSLSHALFRNGESCLQLDWPTRYKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKTNTIPRPKQEALHLLDWAHLVKEKGNLMELVDRRLGSNFNEKEVMMTIKVGLLCTNSTANLRPSMSSVLSMLEGKTVIPEFISDSSEVMDEMKLEAMRQYYSQMEENERSETHTSHSSSKDGPWTASSSSAADLYPVHIDSSYWEKRN 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00842 622 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 51 583 - -
Phco10g00842 622 ProSiteProfiles Protein kinase domain profile. 275 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00842 622 SUPERFAMILY Protein kinase-like (PK-like) 259 563 IPR011009 -
Phco10g00842 622 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 20 207 - -
Phco10g00842 622 Gene3D - 22 209 - -
Phco10g00842 622 Pfam Malectin domain 23 202 IPR021720 -
Phco10g00842 622 MobiDBLite consensus disorder prediction 578 603 - -
Phco10g00842 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Phco10g00842 622 CDD STKc_IRAK 281 548 - -
Phco10g00842 622 Pfam Protein tyrosine and serine/threonine kinase 277 544 IPR001245 GO:0004672|GO:0006468
Phco10g00842 622 Gene3D Phosphorylase Kinase; domain 1 238 350 - -
Phco10g00842 622 FunFam Putative LRR receptor-like serine/threonine-protein kinase 351 558 - -
Phco10g00842 622 SMART serkin_6 275 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00842 622 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 244 350 - -
Phco10g00842 622 Gene3D Transferase(Phosphotransferase) domain 1 351 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00842 Phco-Chr10 13717702 13723938 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00842 PK_Tyr_Ser-Thr 3.8e-48 CL0016