Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00838 ATGCCAACGCCAACCACCATGAACACCATCATTTCCTCACATTTCTTCCTCCTTTCACTCCTTCCAATTTGCTTCTCATGGCTTGCTTTTGGAGTCACACTGCCAAAGAATGAAGTGTCAGTGCTGAAAGAGATAGCTATAACACTTGGAAAGAAGGATTGGGACTTCAATGTAGATCCATGCAACTGGAACAAATCAAATGACAATATGGCATCTTGCAATTGCAAAATAACCAATGACAGCTTCTGCCATGTAGAGAAAATAGCTCTGAAATCACAGAGTCTTCAAGGCATTCTCCCTCCACAACTGAACAAATTACCTTATCTCCAAGAAATTGAACTCAGTCGTAACTACCTTTGTGGTTCAATTCCTAGAGAATGGGGCTCCTCCAACCTTCAAAAAATTTCCCTTCTTGGAAACAGACTAACTGGTCCAATCCCAAGTGAGCTGGGAAACCTCATCTATCTTACACGCTTGATCCTTGAGTTCAATCAATTATCTGGAAATCTTCCTTCACAGCTTGGAAATCTTGTTCACATTAAACAACTGCATCTAAGCTCCAATAACTTCACTGGTCAATTGCCTGCAAATCTTTCGAGTCTTACTGCAATGAAACAATTCCGAATTAGTGACAACCAGTTATCTGGCAACATACCTGATTGGCTTCGGAATTTGACAAGTCTTGGTCAACTACATATGCAAGGGAGTGGTTTGAGTGGACCAATTCCTCCTGGAATTTCACTTCTACACTTAACAGACTTGAGGATTAGTGACTTGAATGGACCTGATTCTACTTTTCCACCACTTGAAAATATGAAAAGTCTGGATACTTTGATATTAAGGAGTTGCAATATCAATGACACATTTCCTCAGTATCTTGGAGACCTGTCGATTTTGAAGGTTTTAGACCTAAGCTTTAACAAATTATATGGACCAGTGCCAAGAAACCTTCAACAATTAATAAGAGCAGCAGCCTATATATATTTAGCAGGAAACTTCTTCACTGGACCGGTGCCTGAGTGGACAGTGGACAATAACAGAAGTTTGGATCTTTCATATAACAACTTTAGTGTTGGAAACCAAGAGCCAAAGACATGCAACCAGCAAAATGTGAACTTGTTTGCAAGCTTCTCAAGGAATAACTCAGGACCAGTGTCTTGTAACAGCAGCAATAGAACCTGTACTAAAAAAGTTACATCTCTACACATAAATTGTGGTGGAAACCAGACTACTGTTGGAGGTATAACATATGATGAAGATCTATATCCTGCTGGACCAGCAGTATATAAACAAAGTGGAAAGAATTGGGCATTGAGCAACACGGGTCACTTCATGGACAATGATACTATTCCTCCCTATACCACAGAAAATGAAACTAGACTTTACATGAATAATGCTGAGTTATATAAGAATGCACGTGTTTCTCCTATGTCATTGACTTATTATGGATTTTGCTTAGCAAATGGAAACTACACAGTAAAGCTTCACTTTGCTGAGATAATGTTCACTGATGATAAAACATACAGCGACTTAGGGAAGCGTGTATTTGATGTATACATTCAGGGAAAGCGAGTGTTGAAAGATTTTAACATTGCAAATGAAGCACAAGGAGCTGGAAAGGAACTCATAAAAGAATTTGTTGCTCATGTGAGTGGTAATGACCTGGAGATCCGCTTCTACTGGGCAGGCAAAGGGACAACATATATCCCATATAAATCAGTAAATGGTCCTCTTATATCTGCCCTTTCTGTCACATATGGTGGGTTTTCATGTGGAACCAAAACAAAAGAAGACTCAACAGGTGGCCATTCTGTAGGACTTATTGTTGTAATAGCAGTTGCATTGGTGATTGTTGTCATCTTGATTACTGTTAGCGTACTTCGTTGGAGGGGTTTCATTAATTGTTGTCATCTTGATACTTGTTGGCATTCTTTGGTGGAGGGGTTAAGGTCTAAGTCAAAATTCGGACGTCATTTTGGTGGAAATGAACATTTATTAATGAAAGGTCTCGGGGATATAGAACTGCTAACTGGTGTATTTACCTTGCATCAAATCAAAGTTGCAACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGCTTCGGTCCTGTTTATAAGGGCATTCTGCCGAACAGCAAACCGATAGCAGTTAAACAACTTTCATCTAAATCAGACCAAGGAACCCGTGAGTTTATAAATGAGATAGGCATGATCTCTGCTCTGCGACACCCTAATCTTGTTAAACTTTATGGTTGCTGTGCTGAGGGTGATCAATTGTTGTTAGTGTATGAATATATGGAAAACAATAGCCTTGCACATGCTTTATTTGACTCGGAAGATAGCCATTTAAAATTGAATTGGCCAACAAGAAAACATATTTGTCTTGGCATTGCTAGAGGTTTGGCTTTCCTGCATGAAGAATCAAGACTGAGAGTTGTTCACAGAGACTTAAAGACCTCTAATGTGTTGCTTGATGAAGACCTAAACCCCAAGATATCTGATTTTGGTTTGGCCAGACTTCGTGTAGGGGACAATACACACATAAGCACCAGAATTGCAGGGACTTGGGGATATATGGCTCCTGAGTATGCAATGCATGGTTATCTAACTGAAAAAGCAGATGTTTTTAGTTTTGGAGTTGTTATATCGGAAATTGTAAGTGGAAAGAGAAACACTATTCAGCAGTCAAAAGGGGAAGCTTTCTATCTTCTGGATTGGGCACGTTTGTTGAATGAGAGAGGTAACATAATGGAGCTAGTTGATCCAAAGTTGAATTTAGATTTCAATGAAGATGAGGTAAGGTTGATTGTCAAAGTGGCTCTCCTTTGCACCCATGTCACTTCAAGCTACAGGCCCTGTATGTCTTTAGTGCTAAGCATGCTTGAAGGCAGAACAATGGTCCCAGAGTTTGATTCACATTGTAGCGAAGTAATGGATGAGATGAAGCTGGAGGTAATGAGAGAGTTTTACAGTCAAATGGATGAAAATAAAACAAGTGACACTCGAAGTTTGAGCTTAACAAAAGGTGTTCCATGGACTGATTCTTCTTCAACGGCTACAGACCTTAATTTGGCTCAGCTCGATCCTTAA 3096 0.3953 MPTPTTMNTIISSHFFLLSLLPICFSWLAFGVTLPKNEVSVLKEIAITLGKKDWDFNVDPCNWNKSNDNMASCNCKITNDSFCHVEKIALKSQSLQGILPPQLNKLPYLQEIELSRNYLCGSIPREWGSSNLQKISLLGNRLTGPIPSELGNLIYLTRLILEFNQLSGNLPSQLGNLVHIKQLHLSSNNFTGQLPANLSSLTAMKQFRISDNQLSGNIPDWLRNLTSLGQLHMQGSGLSGPIPPGISLLHLTDLRISDLNGPDSTFPPLENMKSLDTLILRSCNINDTFPQYLGDLSILKVLDLSFNKLYGPVPRNLQQLIRAAAYIYLAGNFFTGPVPEWTVDNNRSLDLSYNNFSVGNQEPKTCNQQNVNLFASFSRNNSGPVSCNSSNRTCTKKVTSLHINCGGNQTTVGGITYDEDLYPAGPAVYKQSGKNWALSNTGHFMDNDTIPPYTTENETRLYMNNAELYKNARVSPMSLTYYGFCLANGNYTVKLHFAEIMFTDDKTYSDLGKRVFDVYIQGKRVLKDFNIANEAQGAGKELIKEFVAHVSGNDLEIRFYWAGKGTTYIPYKSVNGPLISALSVTYGGFSCGTKTKEDSTGGHSVGLIVVIAVALVIVVILITVSVLRWRGFINCCHLDTCWHSLVEGLRSKSKFGRHFGGNEHLLMKGLGDIELLTGVFTLHQIKVATNNFDISNKIGEGGFGPVYKGILPNSKPIAVKQLSSKSDQGTREFINEIGMISALRHPNLVKLYGCCAEGDQLLLVYEYMENNSLAHALFDSEDSHLKLNWPTRKHICLGIARGLAFLHEESRLRVVHRDLKTSNVLLDEDLNPKISDFGLARLRVGDNTHISTRIAGTWGYMAPEYAMHGYLTEKADVFSFGVVISEIVSGKRNTIQQSKGEAFYLLDWARLLNERGNIMELVDPKLNLDFNEDEVRLIVKVALLCTHVTSSYRPCMSLVLSMLEGRTMVPEFDSHCSEVMDEMKLEVMREFYSQMDENKTSDTRSLSLTKGVPWTDSSSTATDLNLAQLDP 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00838 1031 Pfam Malectin domain 400 582 IPR021720 -
Phco10g00838 1031 FunFam Putative LRR receptor-like serine/threonine-protein kinase 768 975 - -
Phco10g00838 1031 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 40 194 - -
Phco10g00838 1031 SMART serkin_6 692 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00838 1031 CDD STKc_IRAK 698 965 - -
Phco10g00838 1031 SUPERFAMILY Protein kinase-like (PK-like) 676 976 IPR011009 -
Phco10g00838 1031 ProSiteProfiles Protein kinase domain profile. 692 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00838 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Phco10g00838 1031 Gene3D Ribonuclease Inhibitor 40 196 IPR032675 -
Phco10g00838 1031 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 25 998 - -
Phco10g00838 1031 Gene3D - 396 587 - -
Phco10g00838 1031 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 662 767 - -
Phco10g00838 1031 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 398 587 - -
Phco10g00838 1031 FunFam Leucine-rich repeat transmembrane protein kinase 197 400 - -
Phco10g00838 1031 Gene3D Phosphorylase Kinase; domain 1 669 767 - -
Phco10g00838 1031 Pfam Protein kinase domain 694 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00838 1031 SUPERFAMILY L domain-like 74 341 - -
Phco10g00838 1031 Gene3D Transferase(Phosphotransferase) domain 1 768 980 - -
Phco10g00838 1031 Gene3D Ribonuclease Inhibitor 206 385 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00838 Phco-Chr10 13599850 13615176 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00838 Pkinase 7.7e-48 CL0016