Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00835 ATGAAGAACATCACTCCCTCTCAACTTCTCTTCCTTTCACTCCTTCTGCTGTGCTTCACATCCCTCGCCTTTGGACAAAATACCACTCACCCAGACGAAGTGGACGCTCTGAAAGAAATAGGCAAGACCCTTGGTAATAAGAATTGGGACACAGATATAGATCCATGCAGTAATCAACCTCCCTGGAATGTGACTCCGGAGGAAAACAGTGTCAGCTGCAATTGTTCTATCCCCACTGACACCTTCTGCCATGTTGTTTCAATTATTTTGAAGTCACAAAATCTTTCGGGTACACTTCCAAGTGAATTAGTGAGATTGCCATACCTCCAAAAAATTCACCTCTCTCGAAACTACCTTAATGGTACAATTCCTCCACAATGGGGCTTCATGAAGCTTGTCAACATATCCATTCTTGGAAATCGGATAACAGGTCCAATACCAAAAGAATTAGGAAATATCAGCACACTGAAAGTTTTAGCCCTGGAGTTCAATCAATTATCTGGAGAGCTTCCTCCAGAGCTTGGAAATCTCCCTCAACTTGAAAGATTGCTTCTTACATCCAACTATTTTACTGGAAATTTACCTGCAACATTTGCTAGACTCACTACACTAAAGCACATTCGACTTGGCGACAATCAATTCTCTGGAACTTTACCTGATTTCATTCAAAGATGGACAAGTTTAGAGAGGCTGGTGATGTATGGGAGTGGTTTTAGTGGGCCAATTCCTTCTGGAATTTCATTTTTGAACAACCTCACTGATTTGAGGATTAGTGACTTGAAAGGACCAGATTCTCAATTTCCCCAACTTAAAAACTTAACAATTTTGCAAACACTAGTACTGAGGAGTTGCAATCTTATAGGAATGGTTCCTGAATACCTTGGAAATGTGACTAGCTTACGATCATTAGATCTCAGCTTTAACAAATTAACTGGGCCGATTCCAAGAACCTTTGGTGACCTAAAGGATATAAATATGTTATATTTAACTGGAAATCTTTTCACTGGACCAGTACCCAAAGGGATAGATAAGCTAGATTATACTGATCTCTCATATAACAATTTGAGCATCGAAAACCCAGAGCAATTGACATGTCAACAGGGAACTGTGAACTTGTTTGCTTCATCTTTGAAGGGAAATGACTTGGGAATGGTTCCATGTTTAGGCAACATTAACTGTCCTAAAACTTTGTACTCTCTCCATATAAATTGTGGAGGGAAGTTAATATCCAATGGAAACATAAAATATGATGATGATTCACAAGAAGCTGGCCCAGCAAGATTTAATCGAGCAAGATCAAATTGGGTATTAAGCAACACTGGTCATTTCTTTGATAGTAGTCGTGTGGACTACTATACTTGGTCTAATACAACTAAGCTTGACATCAACAATGGCGAATTATATATGGATGCACGTGTTTCTCCCCTTTCTCTCACATATTATGCATTTTGCATGGGAAATGGAAGCTACACAATAAGCCTTCATTTTGCAGAAATAATGTTCACTGATGATCAAACATTTAGCAGCTTGGGAAGACGTGTATTTGACATTTATGTTCAGAGAAAGTTGGTGCTGAAGGATTTCAATATTGCAAAAGAAGCAAAAGGAGTTGGTAAAGCAATCATAAAAAATTTCACTGCTACAGTGAATAGTAGTACCTTAGAGATTCGCTTGCAGTGGGCTGGAAAAGGGACAACTGGTATACCATTTGGATCAGTTCATGGTCCTCTTATATCTGCTATATCTGTTAATCCTGATTTTACACCCCAAGAGAAAAATAAAGATGGTGTACCTATGCATTATATTGTTGCAATGGTAGTTACTGGAGCACTTGTTATCATCATAATATTTGCCATAGCTTGGTGGAGAGGATGTTTAAGAAGAAAGGTATCGTTAGAAAAAGAATTAATGGGTGTAGATTTCCAAACTGGCTTATTTAGCTTAAGAAAAATCAAAGCTGCAACTAAAAACTTTGATATTAGCTTCAAGATTGGAGAAGGAGGTTTTGGTCCTGTATACAAGGGTGTCCTCTTAGATGGCACGGTAATAGCAGTTAAACAACTTTCTTCTAAGTCAAGACAAGGGAATCGTGAGTTTATAAATGAGATTGGCTTGATTTCTGCTTTGCAACACCCTTGTCTAGTTAAACTTTATGGTTGTTGTATGGAGGGAAATCAGTTGATGCTAATATATGAATACATGGAAAACAACAGTCTCGCTCGTGCTTTATTTGAACCAAAAGAATTTGGATTGAAGCTGAATTGGTCGACAAGGCAAAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCTTACCTCCATGGAGAGTCAAGGCTGAAGATAGTTCACAGGGACATCAAGGCCACTAATGTGTTACTAGACAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAACTTGATGAAGAGGGCTACACACACATAAGTACCAGAGTAGCTGGCACCTATGGATACATGGCTCCAGAATATGCAATGCATGGTTATTTAACTGATAAAGCAGATGTGTATAGTTTTGGTATTGTTGCACTAGAAATTGTTAGCGGAAAAAGTAATAACATGAATTGTTCAAAGGAAGGATGTTTCTCTCTCATTGATTTGGTGCATCTCTTGAAAAGACAAAGTGATCTAATGGACCTAGTTGATGAGAGGTTGGGTAAGGATTTCAGAAAAGATGAAGTAGTGGTAATGATTAATGTGGCTCTATTATGTACGCAAGTTTCTCCAATGCGTAGACCCACCATGGCTTCAGTTGTATGCATGCTTGAAGGAAAAACTAATGTTCCAGAGGTGGTATTAGATACAAGTGAAGTATTAGATGGAAAGAAGTTGGAGATGCAACAATATTACCGTATGAGAGAGAAAAATATAACTCATGAAACTCAAGAAGAGAGCATCTCAATGGGTGAAACTTCAACATTTATGTCTAGTATAAACATGGATTCTTCTTTCCAAGAGAAGAGTCATTAG 2991 0.3831 MKNITPSQLLFLSLLLLCFTSLAFGQNTTHPDEVDALKEIGKTLGNKNWDTDIDPCSNQPPWNVTPEENSVSCNCSIPTDTFCHVVSIILKSQNLSGTLPSELVRLPYLQKIHLSRNYLNGTIPPQWGFMKLVNISILGNRITGPIPKELGNISTLKVLALEFNQLSGELPPELGNLPQLERLLLTSNYFTGNLPATFARLTTLKHIRLGDNQFSGTLPDFIQRWTSLERLVMYGSGFSGPIPSGISFLNNLTDLRISDLKGPDSQFPQLKNLTILQTLVLRSCNLIGMVPEYLGNVTSLRSLDLSFNKLTGPIPRTFGDLKDINMLYLTGNLFTGPVPKGIDKLDYTDLSYNNLSIENPEQLTCQQGTVNLFASSLKGNDLGMVPCLGNINCPKTLYSLHINCGGKLISNGNIKYDDDSQEAGPARFNRARSNWVLSNTGHFFDSSRVDYYTWSNTTKLDINNGELYMDARVSPLSLTYYAFCMGNGSYTISLHFAEIMFTDDQTFSSLGRRVFDIYVQRKLVLKDFNIAKEAKGVGKAIIKNFTATVNSSTLEIRLQWAGKGTTGIPFGSVHGPLISAISVNPDFTPQEKNKDGVPMHYIVAMVVTGALVIIIIFAIAWWRGCLRRKVSLEKELMGVDFQTGLFSLRKIKAATKNFDISFKIGEGGFGPVYKGVLLDGTVIAVKQLSSKSRQGNREFINEIGLISALQHPCLVKLYGCCMEGNQLMLIYEYMENNSLARALFEPKEFGLKLNWSTRQKICVGIARGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGYTHISTRVAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNNMNCSKEGCFSLIDLVHLLKRQSDLMDLVDERLGKDFRKDEVVVMINVALLCTQVSPMRRPTMASVVCMLEGKTNVPEVVLDTSEVLDGKKLEMQQYYRMREKNITHETQEESISMGETSTFMSSINMDSSFQEKSH 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00835 996 Gene3D Ribonuclease Inhibitor 264 376 IPR032675 -
Phco10g00835 996 Gene3D Ribonuclease Inhibitor 189 263 IPR032675 -
Phco10g00835 996 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 30 261 - -
Phco10g00835 996 FunFam Putative LRR receptor-like serine/threonine-protein kinase 734 941 - -
Phco10g00835 996 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 967 - -
Phco10g00835 996 Pfam Protein tyrosine and serine/threonine kinase 662 926 IPR001245 GO:0004672|GO:0006468
Phco10g00835 996 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 267 359 - -
Phco10g00835 996 Gene3D Transferase(Phosphotransferase) domain 1 734 944 - -
Phco10g00835 996 Gene3D Phosphorylase Kinase; domain 1 625 733 - -
Phco10g00835 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Phco10g00835 996 Gene3D - 397 586 - -
Phco10g00835 996 SUPERFAMILY Protein kinase-like (PK-like) 642 932 IPR011009 -
Phco10g00835 996 Pfam Malectin domain 399 581 IPR021720 -
Phco10g00835 996 SUPERFAMILY L domain-like 77 355 - -
Phco10g00835 996 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 627 733 - -
Phco10g00835 996 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 397 586 - -
Phco10g00835 996 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Phco10g00835 996 ProSiteProfiles Protein kinase domain profile. 658 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00835 996 SMART serkin_6 658 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00835 996 CDD STKc_IRAK 664 931 - -
Phco10g00835 996 Pfam Leucine rich repeat 276 333 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00835 Phco-Chr10 12318834 12350608 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00835 PK_Tyr_Ser-Thr 3.5e-46 CL0016