Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00828 ATGAGTTTCCCTCTACTTTTCCATCTTTGGTTTCTTGGCTTTTGTTTCATCTCTTCTTTGGCTAGGGGAGCTACAATACCTGAAGATGAAGTGCAAGTAATGAAAGAGATAGCAAAGACACTTGGGAAGAAGGATTGGGATTTCAGTGTAGATCCATGCAGTGGACAAAGAAATTGGTCTGTTGAAGTGAAGGGATTTGAAAATGCTCTCACCTGCAATTGCCATTTTGCAAATGCTACTATCTGCCACATTGTGAGCATTGTTCTGAAGTCACAAAATCTTTCGGGTACACTTCCAAGTGAATTAGTGAGATTGCCATACCTCCAAGAAATTGACCTCTCTCGAAACTACCTTAATGGTACAATTCCTCCACAATGGGGCTTCATGAAGCTTGTCAACATATCCATTCTTGGAAATCGGGTAACAGGTCCAATACCAAAAGAATTAGGAAACATCACCACACTGAAAAGTTTAGTCCTGGAGTTCAATCAATTATCTGGAGAGCTTCCTCTAGAGCTTGGAAATCTCCCTCGACTTGAAAGATTGCTTCTTACATCCAACTATTTCACTGGAAATTTACCAACAACATTTGCTAGACTCACTACACTAAAGCAAATTCGACTTGGCGACAATCAATTCTCTGGAACCTTACCTGATTTCATTCAGAGATGGACAAGTCTAGAGAGGCTGGTGATGCAAGGGAGTGGTTTTAGTGGGCCAATTCCTTATGGAATTTCATTTTTGAACAACCTCACTGATTTGAGAATTAGTGACTTGAAAGGACCATATTCTCAATTTCCCCAACTTAAAAACTTAACAATTTTGCAAACACTAGTATTGAGGAGTTGCAATCTTATAGGAATGGTTCCTGAATACCTTGGAAATGTGACTAGCTTACGATCATTAGATCTCAGCTTTAACAAATTAACTGGACCGATTCCAAGAACCTTGGGTGGCCTAAACGATATAAATATATTATATTTAACTGGAAACCTTTTCACTGGACCACTACCCAACTGGATAGATAGGCCAGACTATACTGATCTCTCATATAACAATTTGAGCATCGAAAACCCCGAGCAATTGACATGTCAACAGGGAAGCGTGAACTTGTTTGCATCATCTTTGAAGGGAAATGACTTGGGAATGGTTCCATGTTTAGGCAACATCAACTGTCCTAAAACTTGGTACTCTCTCCATGTAAATTGTGGAGGGAAGTTAATATCTAATGGAAACATAAAATATGATGATGATTCACAAGAAGCTGGCCCAGCAAGATTTCGTCGAACAGGATCAAATTGGGTATTTAGCAACACTGGTCATTTCTTTGATAGTGGTCGTGTGGACTACTATACTTGGTCTAATACAACTAAGCTTGACATCAACAATGGCGAATTATATATGGATGCACGTGTTTCTCCCCTTTCTCTCACATATTATGCATTTTGCATGGGAAATGGAAGCTACACAATAAGCCTTCATTTTGCAGAAATAATGTTCACTGATGATCAAACATATAGCAGCCTGGGAAGACGTTTATTTGACATCTATGTTCAGAGAAAGTTGGTGCTGAAGGATTTCAATATTGCAAAAGAAGCAAGAGGAGTTGGTAAAGCAATCATAAAAAAGTTCACTGCTATAGTGAATAGCAGTACCTTAGAGATTCGCTTGCAGTGGGCTGGAAAAGGGACAACTGGTATACCATTTGGATCAGTTCATGGTCCTCTTATATCTGCTATATCTGTTGATCCTGATTTTACACCCCGAGAGGAAAATAAAGACGGTGTACCTATGCATTATATTGTTGCAATTGTAGTTACTGGAGCACTTATTATCATCATAATATTTGGCATAGCTTGGTGGAGAGGGTGTTTAAGAAGAAAGATATCGTTAGAAAAAGAATTAATTGGTGTAGATTTCCAAACTGGCTTATTTAGCTTGAGAAAAATCAAAGCTGCAACTAAAAACTTTGATATTAACTTCAAGATTGGAGAAGGAGGTTTTGGTCCTGTTTACAAGGGTGTTCTCTCAGATGGCACGGTAATAGCAGTTAAACAACTTTCTTCTAAATCAAAACAAGGGAATCGTGAGTTTATAAATGAGATTGGCATGATTTCTGCTTTGCAACACCCTTGTCTAGTTAAACTTTATGGTTGCTGTATGGAGGGAAATCAGTTGATGCTAATATATGAATACATGGAAAACAACAGTCTTGCTCGTGCTTTATTTGAACCAGAAAAATTTGAATTGAAGCTGAATTGGTCAACAAGGCAAAAGATCTGTCTTGGTATTGCTAGAGGTTTGGCTTACCTCCATGGAGAGTCAAGGCTGAAGATAGTTCACAGGGACATCAAGGCCACTAATGTGTTACTAGACAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAACTTGATGAAGAGGGCTATACACACATAACTACTAGAGTAGCTGGCACTTATGGATACATGGCTCCAGAATATGCAATGCATGGTTATTTAACTGATAAAGCAGATGTGTATAGTTTTGGTATTGTTGCATTAGAAATTGTTAGCGGAAAGAGTAATAGCATGAACTGGCCAAAGGAAGGATGTTTCTCTCTCGTTGATTTGGTGCATCTCTTGAAAGAACAAGGTGATCTAATGGACCTAGTTGATGAAAGGTTGGGTAAGGATTTCAAAAAAGATGAAGTAATAGTAATGATTAATGTGGCTCTATTATGTACACAAGTTTCTCCAATGCACAGACCCACCATGGCTTCAGTTGTATGCATGCTTGAAGGAAAAACTAATGTTCAAGAGGTGGTGTTAGATACAAGTGAAGTTTTGGATGGAAAGAAGTTGGAGATGCAACAATATTACTGTATAAGAGAGAAAAATATGACTCATGAAACTCAAGAAGAGAGCATCTCAATGAGTGAAACTTCAGCATTTATGTCTGATACAGATCTATATTCTATCAACATGGATTCTTCTTTCCAAGAGAAGAGTCATTAG 3003 0.3823 MSFPLLFHLWFLGFCFISSLARGATIPEDEVQVMKEIAKTLGKKDWDFSVDPCSGQRNWSVEVKGFENALTCNCHFANATICHIVSIVLKSQNLSGTLPSELVRLPYLQEIDLSRNYLNGTIPPQWGFMKLVNISILGNRVTGPIPKELGNITTLKSLVLEFNQLSGELPLELGNLPRLERLLLTSNYFTGNLPTTFARLTTLKQIRLGDNQFSGTLPDFIQRWTSLERLVMQGSGFSGPIPYGISFLNNLTDLRISDLKGPYSQFPQLKNLTILQTLVLRSCNLIGMVPEYLGNVTSLRSLDLSFNKLTGPIPRTLGGLNDINILYLTGNLFTGPLPNWIDRPDYTDLSYNNLSIENPEQLTCQQGSVNLFASSLKGNDLGMVPCLGNINCPKTWYSLHVNCGGKLISNGNIKYDDDSQEAGPARFRRTGSNWVFSNTGHFFDSGRVDYYTWSNTTKLDINNGELYMDARVSPLSLTYYAFCMGNGSYTISLHFAEIMFTDDQTYSSLGRRLFDIYVQRKLVLKDFNIAKEARGVGKAIIKKFTAIVNSSTLEIRLQWAGKGTTGIPFGSVHGPLISAISVDPDFTPREENKDGVPMHYIVAIVVTGALIIIIIFGIAWWRGCLRRKISLEKELIGVDFQTGLFSLRKIKAATKNFDINFKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSKQGNREFINEIGMISALQHPCLVKLYGCCMEGNQLMLIYEYMENNSLARALFEPEKFELKLNWSTRQKICLGIARGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGYTHITTRVAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNSMNWPKEGCFSLVDLVHLLKEQGDLMDLVDERLGKDFKKDEVIVMINVALLCTQVSPMHRPTMASVVCMLEGKTNVQEVVLDTSEVLDGKKLEMQQYYCIREKNMTHETQEESISMSETSAFMSDTDLYSINMDSSFQEKSH 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00828 1000 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 940 - -
Phco10g00828 1000 Pfam Leucine rich repeat 275 332 IPR001611 GO:0005515
Phco10g00828 1000 Gene3D Ribonuclease Inhibitor 260 383 IPR032675 -
Phco10g00828 1000 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 193 260 - -
Phco10g00828 1000 CDD STKc_IRAK 663 930 - -
Phco10g00828 1000 Gene3D Phosphorylase Kinase; domain 1 626 732 - -
Phco10g00828 1000 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 952 - -
Phco10g00828 1000 ProSiteProfiles Protein kinase domain profile. 657 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00828 1000 SUPERFAMILY L domain-like 78 354 - -
Phco10g00828 1000 Gene3D Ribonuclease Inhibitor 188 259 IPR032675 -
Phco10g00828 1000 Pfam Malectin domain 398 580 IPR021720 -
Phco10g00828 1000 Gene3D Transferase(Phosphotransferase) domain 1 733 948 - -
Phco10g00828 1000 SMART serkin_6 657 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00828 1000 Gene3D - 396 584 - -
Phco10g00828 1000 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Phco10g00828 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Phco10g00828 1000 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 30 187 - -
Phco10g00828 1000 Gene3D Ribonuclease Inhibitor 38 187 IPR032675 -
Phco10g00828 1000 Pfam Protein tyrosine and serine/threonine kinase 660 926 IPR001245 GO:0004672|GO:0006468
Phco10g00828 1000 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 396 585 - -
Phco10g00828 1000 SUPERFAMILY Protein kinase-like (PK-like) 642 929 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00828 Phco-Chr10 11980002 12007497 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00828 PK_Tyr_Ser-Thr 5e-47 CL0016