Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00820 ATGAAGATTCAGTGTAACGTCTGTGAGGCTGCGGAGGCCAAGGTTCTATGTTGTGCTGATGAGGCTGCGCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTCATCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCGTTAGGCTATTTTTTCTGTCTGGAGGATCGGGCTCTGTTCTGCAGAAAATGTGATTTGGCCATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGAGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGCGCATCATCATCATCTTTGAAGTCAGAATCTGGGGAGAAAATTTCAGATACAAAATCCTCTTCTATCTCTAGAAAGGTTTCCACAGTGCCTCAGCCATCAGATTACAATGAATTGTTACCTATAGAAGTTGGAGGAGTTGAGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACAGCTGGAAATATCTCACAGTGGACAATAGATGAATTTATTGGCTTAAACGAGTTCAGTCAGAATTATGAATACATGGAAGGATCATCAAGGGCTGATGGTGGTAAGTTAGGGGATTTTGATTCTCCATTTTTAAGATCCGGTGACGAGGAAATGGAGGAGGAGGAGGACTATTTGGAACGGGTTCCAGATTCATCATGGACTGTTCCACAGATCCCTTCCCCACCCACAGCTTCTGGGTTACACTGGCCAAAACACACTCAATATTCATCTGATAGTCTTCTGTTTGTTCCTGACATAAGCTTTTCTCAGATGCAACACTCCGAGATCAGTAGTATATTTTCTAGACGCCGGAGGCAGCTTTAA 882 0.4478 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVHLSTSSSHMPKCDICQEALGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSSSLKSESGEKISDTKSSSISRKVSTVPQPSDYNELLPIEVGGVEGFPPAKESFGGGSTAGNISQWTIDEFIGLNEFSQNYEYMEGSSRADGGKLGDFDSPFLRSGDEEMEEEEDYLERVPDSSWTVPQIPSPPTASGLHWPKHTQYSSDSLLFVPDISFSQMQHSEISSIFSRRRRQL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00820 293 Gene3D Classic Zinc Finger 1 92 - -
Phco10g00820 293 CDD Bbox1_BBX-like 5 47 - -
Phco10g00820 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phco10g00820 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phco10g00820 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Phco10g00820 293 MobiDBLite consensus disorder prediction 110 143 - -
Phco10g00820 293 MobiDBLite consensus disorder prediction 239 256 - -
Phco10g00820 293 FunFam B-box zinc finger protein 22 1 93 - -
Phco10g00820 293 MobiDBLite consensus disorder prediction 232 256 - -
Phco10g00820 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Phco10g00820 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Phco10g00820 293 CDD Bbox1_BBX-like 56 99 - -
Phco10g00820 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00820 Phco-Chr10 11292517 11295766 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco10g00820 zf-B_box 3.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00820 10 11292517 11295766 Phco10g00820 10 11292517 11295766 ECH