Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00773 ATGTGTTGTGCTTGGCCTACATGCAACTCTAACTGGATAAAGATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAATAGTTCTGGAGTTTCGGATAGGAACCAAAGGGTTCACTATCCTGAAAGGAACCCATTCTCGGGTGAGGGATCGCAGGATTCGGGGTTTAAAAGGGAAAGAGAAAGGGTTCTGTTGGCTCAAGGTGATCATGCTAAAACTTTGGGTGGTGGGTTTTCTGGGTTATGTGAAGATGAAGTGGAGGTTGACCCCTTTTATGGTGCTGTGGAATGGGGTGATGTTAGCTTGAGGCAGTGGTTGGATAAACCCCAACGATCTGTGGATGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAGATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCGTCTTTCAATCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCGGATTCTTTAGGAGAAGGATTAAACAACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCATCAGAGCTTGGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCTACAACTATTGCTCGGTCAGATTCTAGTTGCATGCTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGGAAGGAAGAAGAAGTAGAAGGAAAGAAACAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGTTGCTGATGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTGGGGGTTCTTCTTTTTGAGCTATTTTGTCCGCTAAGCTCAAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCGCAGTTACTTCTTAAGTGGCCCAAAGAAGCTTCCTTTTGCTTATGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGCGAGTTCCTTAATGAACAAAGAGACGATATGGAAGAACGTGAAGCAGCAATAGAGCTGAGACAAAGGATAGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTATTACTTCAACAGAGGAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGAGCTTGGATATTGAAGAAGTGACTAAGCAGCAAATTAGATTTAAACAGGTTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAGTTTCCCATCAATGACAATTGTTGACAGTGAGGATTCTGCATATCTAGGGACTAGAAAACGAGTGAGACTAGGGACACATGTTAAAAACCTTGAGGAATGTGATGATTACGATGATGATGGAGGAGATGATCAGAAAAGTAATGGAGGTTTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTTAAGAAACTTGAGTCAGCATACTTTTTGACACGATGTAGACCGGCATATTCCTCTGGGAAACTGGTGACTACGCATCCTCCTGTAACAAGTGATGGTAGAGGATCTGTTGTTTTGACTGAAAGAAGTTGCATCAACGACAAGAAATCAAAAGAGCAGTGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGTAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTTTTGCATTCATCCAACCTGGTATGTTCACTCAGTTTTGATCGTGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAAATTAAAGTGTTTGAATGTGATTCAATCATAAATGAGGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGTAGTTTATGTTGGAATGCATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTGCAGTTATGGGATGTGACAAGAAGTCAAGTACTCTCTGACATGAGGGAGCATGAGCGGCGCGTGTGGTCCATTGATTTCTCGTCAGCAGACCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACCAAGGCAAATGTATGCTGTGTTCAGTTCCCGCTGGATTCTTCTCGTTTCCTTGCATTTGGTTCAGCAGATCATCGAATATATTACTATGATCTTCGCAACCTTAAAATGCCGCTGTGTACTTTGGTTGGACACAACAAGACTGTCAGCTACATCAAGTTTGTAGACACTGTGAACCTTGTCTCAGCTTCCACAGATAACACTTTAAAGCTTTGGGATTTGTCTACGTGTGCATCTCGAGTTATAGACTCACCGATTCAATCATTCACAGGTCACGTGAATGTTAAGAACTTTGTTGGATTATCAGTAACTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAAGCCTTCCCCATGCCTGCTCTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCCGGTCACGAAGTGGATGACGCCGCGCAATTCGTTTCGTCAGTTTGTTGGCGGGGTCAGTCATCCACCTTGCTAGCCGCTAATTCCACAGGGAATGTCAAAATTCTGGAGATGGTTTAG 2727 0.4257 MCCAWPTCNSNWIKMEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPERNPFSGEGSQDSGFKRERERVLLAQGDHAKTLGGGFSGLCEDEVEVDPFYGAVEWGDVSLRQWLDKPQRSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNNQGGEIKTPTSLCPHDMHHQSLGSEDFVPVKTSTTIARSDSSCMLSSAVYAARASLIEETEENKMKDRRKEEEVEGKKQSFPMKQILLMEMSWYTSPEEVADDSSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTISFLSLDIEEVTKQQIRFKQVTGTELGSDDRSASSFPSMTIVDSEDSAYLGTRKRVRLGTHVKNLEECDDYDDDGGDDQKSNGGFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLVTTHPPVTSDGRGSVVLTERSCINDKKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVLSDMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSSRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHVNVKNFVGLSVTDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGHEVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00773 908 ProSitePatterns Trp-Asp (WD) repeats signature. 790 804 IPR019775 -
Phco10g00773 908 PRINTS G protein beta WD-40 repeat signature 706 720 IPR020472 -
Phco10g00773 908 PRINTS G protein beta WD-40 repeat signature 790 804 IPR020472 -
Phco10g00773 908 PRINTS G protein beta WD-40 repeat signature 663 677 IPR020472 -
Phco10g00773 908 MobiDBLite consensus disorder prediction 24 62 - -
Phco10g00773 908 Gene3D Transferase(Phosphotransferase) domain 1 105 375 - -
Phco10g00773 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 728 IPR001680 GO:0005515
Phco10g00773 908 SUPERFAMILY Protein kinase-like (PK-like) 96 365 IPR011009 -
Phco10g00773 908 Pfam WD domain, G-beta repeat 685 719 IPR001680 GO:0005515
Phco10g00773 908 Pfam WD domain, G-beta repeat 596 625 IPR001680 GO:0005515
Phco10g00773 908 Pfam WD domain, G-beta repeat 768 803 IPR001680 GO:0005515
Phco10g00773 908 Coils Coil 239 259 - -
Phco10g00773 908 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 569 908 - -
Phco10g00773 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 772 806 - -
Phco10g00773 908 ProSiteProfiles Protein kinase domain profile. 8 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00773 908 MobiDBLite consensus disorder prediction 24 41 - -
Phco10g00773 908 SUPERFAMILY WD40 repeat-like 596 905 IPR036322 GO:0005515
Phco10g00773 908 Gene3D - 572 908 IPR015943 GO:0005515
Phco10g00773 908 Coils Coil 360 380 - -
Phco10g00773 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 772 806 IPR001680 GO:0005515
Phco10g00773 908 SMART serkin_6 12 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00773 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 723 - -
Phco10g00773 908 Coils Coil 404 424 - -
Phco10g00773 908 PANTHER PROTEIN SPA1-RELATED 2 55 908 IPR044630 GO:0009640
Phco10g00773 908 SMART WD40_4 812 851 IPR001680 GO:0005515
Phco10g00773 908 SMART WD40_4 765 803 IPR001680 GO:0005515
Phco10g00773 908 SMART WD40_4 862 906 IPR001680 GO:0005515
Phco10g00773 908 SMART WD40_4 679 719 IPR001680 GO:0005515
Phco10g00773 908 SMART WD40_4 591 626 IPR001680 GO:0005515
Phco10g00773 908 SMART WD40_4 637 676 IPR001680 GO:0005515
Phco10g00773 908 SMART WD40_4 722 761 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00773 Phco-Chr10 9873057 9877235 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Phco10g00773 WD40 0.023 CL0186