Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00772 ATGGGTGGCATGTGTTGCAAGCCCTCCGCCATTGAAGACAGTAAGGAGAGTCCAAGGGAGCGTTTATCGAGCAAGGCTGTGTCGGACTTGCGTGTATCTAGGGGAACTTCATCGAGGAGGGAGGAAGTGTTTCGGGTAAAAGATAGATATGATAACAATGAGGGAAGAACTGCATTGATTGATAAGCAAGGGAATGGTTCTGTTAGAGTGCAAGGTGATAGTATTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGCACAACATCCGGGGATTGGTAGTGTTCCCAAAGCCATGGAAGGTGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAGGGGATGGCTGCCGCGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGTGATCTTGAACAGAAAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACTGAAGCTCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACAATGGGATATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCTAGTCAAGCTCAGCCATTGACGAGCCGAGTTGTCACTCTTTGGTATAGGCCTCCTGAGCTTTTGCTTGGAGCCACTTATTATGGCACTGCTGTAGACTTATGGAGTACAGGTTGCATACTTGCTGAGCTGTATGCTGGGAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTACCTCATGCAACAATATTTAAGCCTCAACAGCCCTATAGACGATGTGTTTCTGAAACATTCAAGGACTTTCCTACACCTGCAATAGAATTGATAGAGACTCTTTTGTCCATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCGTTGAGTAGTGAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGATGAAGAAGCTAGAAGACAAGGAGGAGCAGGAGTCAAAGGCCAGAGGCATGATCTTGAGAGAAAAGGCACTAGAGAATCACGAGCCATTCCTGCACCTGATGCCAATGCTGAACTGGTCTCGTCAATGCAGAAGAGGCAAGGGCAGGCTAATTCTCAGAGCAGGAGTGAGAAGTTTAACCCTCATCCTGAAGAAGTTGCTTCCGGATTTCCCATTGATCCCCCTAGACCATCACAAGCTGCAGCAGTAAGTGTGGATCCCCCTGTTCATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCAGCATGGGCAAAAGCCGGGAAGAACCAGGACGATGCTCCCAAGATTTCAATGGGAGGAGACTTGTCAACAATATCAGGCTTAGTTGCGGCAAGGAGGAGTATGTTGTCTGACGATCGCAGAGAAAGGTCTGGATCATCACAAGCAGAGGCCCAAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGTCAATGATGCAACAGGATCAGAAGCATCATGCACATGCTCCTCAAAAGGAAGAAGGAAGAGCCAGTAGCAACAAAGACTCAAGTCTTGTTGGTTATGGCTCCAAGGGTCATAAAATTCATTATTCTGGCCCTCTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAGGACCATGACCGCCAAATCCAAGAGGCAGTTCGAAGATCAAGATTAGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGAAACCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA 2127 0.4565 MGGMCCKPSAIEDSKESPRERLSSKAVSDLRVSRGTSSRREEVFRVKDRYDNNEGRTALIDKQGNGSVRVQGDSIERKREKMEYAVAQHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPSQAQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPTPAIELIETLLSIDPADRGTSASALSSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGGAGVKGQRHDLERKGTRESRAIPAPDANAELVSSMQKRQGQANSQSRSEKFNPHPEEVASGFPIDPPRPSQAAAVSVDPPVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGDLSTISGLVAARRSMLSDDRRERSGSSQAEAQKLISRFPGSFKEASESMMQQDQKHHAHAPQKEEGRASSNKDSSLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRSRLDKAKMRRLQAEGNQITNSLFVSGR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00772 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Phco10g00772 708 MobiDBLite consensus disorder prediction 481 498 - -
Phco10g00772 708 CDD STKc_CDK9_like 131 415 - -
Phco10g00772 708 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00772 708 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00772 708 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
Phco10g00772 708 MobiDBLite consensus disorder prediction 614 635 - -
Phco10g00772 708 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Phco10g00772 708 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Phco10g00772 708 MobiDBLite consensus disorder prediction 608 646 - -
Phco10g00772 708 MobiDBLite consensus disorder prediction 421 564 - -
Phco10g00772 708 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Phco10g00772 708 PANTHER CELL DIVISION PROTEIN KINASE 129 421 - -
Phco10g00772 708 MobiDBLite consensus disorder prediction 1 39 - -
Phco10g00772 708 MobiDBLite consensus disorder prediction 434 469 - -
Phco10g00772 708 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00772 708 MobiDBLite consensus disorder prediction 12 27 - -
Phco10g00772 708 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Phco10g00772 708 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00772 Phco-Chr10 9836606 9842759 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Phco10g00772 Pkinase 6.3e-69 CL0016