Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00748 ATGGTCCCAGTTCTAATTACTTTGGTGTTTGGGGATATGGGATATAAGTATCTTCATTTGGGCATCTTATCTCTTTCTTCGAGGGAGATCTCTGGTTCTTGGGATTTGGTTTTGGTGGGGACTGGTAATCCAAATCTTTACCTTCAAATTGTGGCTTTCCTTTGCAAGTTGCAAGTTGTTTGTTGCAGTTCGAGGGTTGGAAGTCTTGGAGCTGTGACTAAAAGATACTTCATTGTAGTTCTTCTTCTCAAGCACAACGCTGCACTTTTCAGTGATACTAGCTTCTGCTGTGCTCATGGGAGCTTAGTCCTGATTTTGAGCAGAGTATATATCAGTTTGGTTTCAGTAATGGTGCTGCTCAGATGTTTCTCAATGACACTTTTGCAATGGTGTTTTTTGGCTTCCTTAGTTTGCTTGTCACTAGGGCTTAATAATAATCAAGCCCCCTGTGACCCTCATGATCTATCAGCTCTGAAGAAGTTTGCAGGAAAACTTACAAGTGGCTTTATCATCACAGCATGGTCCAATGACACTGTATGCTGCAACTGGCGTGGAGTTGTTTGTGATAATGTGACTGGAGGTGGTGGAACAGTTACTAGTAGAGTGACCAAGTTGATCCTGCCTGAAATGGGTCTCTATGGCACAATTTCACCCTCTTTAGCACAGCTGGATCAGCTCAGTGTGCTGAATCTTTCATTGAATCGCCTTAAAGGTGGATTGCCTGTGGAGTTGTCCCAGTTGAAGCTGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCTGGACCTGTTGCTGGAGCCCTTTCTGGTCTGCAATCCATTGAAGTATTGAATATTTCTAGCAATTCACTTTCTGGAGTTCTCTTCCCTTTTGAGGAGTTCCCTCATCTCCTTGCTCTCAACGTGAGCAACAATTCATTCACTGGCGGATTCAGTTCACAAATTTGCAGTGCTACCAAGGAACTTCACACGCTTGATTTGTCAGCAAATAATTTTGTTGGTGGTCTTGAAGGCTTGAACAACTGCACCACATCTCTCCAACGGCTGCATTTGGATTCCAATTCATTTACTGGCCCTCTTCCAGATTACTTGTATTCAATGTCAGCCTTGGAGGAGCTCTCCGTCTCTGCCAACAATTTATCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACCTAAAAATTCTGGTGCTTTGTGGAAACAGGTTTACTGGGGAACTTCCAAATGTATTTGGGAATCTTTTGCAGCTAGAAGAATTAGAAGCACATGGCAATTCATTTTCTGGACCCTTTCCCTCCACCTTGGCTTTATGCTCTAAGCTTAGGGTGCTTAACCTTCGAAATAATTCCTTGTCAGGGCCTATTGATCTTAATTTCACTGGCTTGTCTAATCTTCAAACACTCGACCTTGCTACTAATCATTTCATTGGATACCTTCCAACTTCCCTGTCCTATTGTCGTGAATTGAAGGTTTTAAGTCTTGCTAGGAATGGCTTAACTGGCTCTATCCCCGAAAACTATGCAAACCTAAGTTCACTTTTGTTTGTATCCTTGTCAAACAACAGCATTGAGAACTTATCTGGGGCAGTGTCTGTTATGCAGCAGTGCAAAAATCTCACCACTCTTATCCTCACCAAGAATTTCCATGGTGAGGAAATTCCAAAAAGTGCCACGGTGGGATTTGAGAGCCTTATGGTTTTAGCACTTGGAAATTGTGGTCTTAAAGGTCACATTCCTTCTTGGTTATCCAATTGCAGGAAGTTGGCAGTTCTTGACTTGTCTTGGAACCGTTTGAATGGTAGTGTTCCTTCTTGGATTGGTCAGATGGACAGTTTGTTCTATATGGATTTCTCGAATAATTCTCTTACTGGAGAAATACCAAAAAGTTTGACAGAGTTGAAGGGCCTCATGTGTGCAAACTGTAATAGAGCAAATCTTGCTGCTTTTGCTTTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGCAAGTGGACTGCAATATAACCAGGCCTCAAGTTTCCCTCCTTCAATTTACTTGAGCAATAACATATTGAGTGGAAATATACGGCCCGAAATTGGTCAACTGAAAGCTCTGCATGTCTTGGATTTAAGCAGGAACAACATAACTGGTACCATTCCTAGCACTATTTCTGAGATGGAGAACTTGGAATCCTTGGATTTGTCTTATAATGATCTTTCTGGAGAAATTCCTCCATCATTTAACAACCTCACTTTCTTGTCAAAGTTCAGTGTGGCATATAATCGGTTAGAGGGATCAATTCCAACTGGGGGCCAATTTTTAAGCTTCCCAAGTTCAAGCTTTGAGGGCAACCAAGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAAATTGTCAACAATACAAAGCCCATCATTTCTTCTGGTTCTTCCAAAAAGCTTGGTAGAAGCAATGTCCTTGGCATAACAATCAGTATAGGGATAGGGCTTGCACTTCTTCTTGCAATAATACTGCTAAGAATGTCAAGGAGGGATGACGATAAGCCCATCGATAACTATGATGAAGAACTCAATGGCAGGCCACACAGGTTATCTGAGGCACTTGTTTCCTCAAAGTTGGTGCTTTTCCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACAAAAGCAGCTATCAAGAGACTTTCAGGTGACTGTGGTCAGATGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGATATTGTCGGCATGGCAATGACAGATTGCTAATATACTCGTACTTGGAGAATGGAAGCTTGGATTATTGGCTGCATGAGTGTGTGGATGAAAGCGCAGCTCTAAAATGGGATGCTAGACTCAAGATTGCACAAGGTGCTGCACGTGGATTAGCTTACTTGCATAAGGGGTGTGAGCCATTCGTAGTGCATCGGGACGTTAAATCTAGCAACATTCTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCACGACTACTTCAACCATATGACACTCATGTCACAACTGACTTGGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGACACTGACTGCAACCTTTAGGGGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACTGGTAGAAGACCCGTGGAAGTCATCAAGGGGAAAAATTGCAGAAATCTGGTTTTTTGGGTGTTTCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCATAAGGATCGTGAGAAACAGCTGCTAGAGGTGCTTGCCATTGCTTGTAAATGTCTAGACCAAGATCCTAGGCAGAGACCCGCTATTGAAGTAGTTGTTTCATGGCTTGATTGTGTAAGATTTGATGGTTCTCAACAGTGA 3513 0.4199 MVPVLITLVFGDMGYKYLHLGILSLSSREISGSWDLVLVGTGNPNLYLQIVAFLCKLQVVCCSSRVGSLGAVTKRYFIVVLLLKHNAALFSDTSFCCAHGSLVLILSRVYISLVSVMVLLRCFSMTLLQWCFLASLVCLSLGLNNNQAPCDPHDLSALKKFAGKLTSGFIITAWSNDTVCCNWRGVVCDNVTGGGGTVTSRVTKLILPEMGLYGTISPSLAQLDQLSVLNLSLNRLKGGLPVELSQLKLLKFLDVSHNMLSGPVAGALSGLQSIEVLNISSNSLSGVLFPFEEFPHLLALNVSNNSFTGGFSSQICSATKELHTLDLSANNFVGGLEGLNNCTTSLQRLHLDSNSFTGPLPDYLYSMSALEELSVSANNLSGQLSKQLSKLSNLKILVLCGNRFTGELPNVFGNLLQLEELEAHGNSFSGPFPSTLALCSKLRVLNLRNNSLSGPIDLNFTGLSNLQTLDLATNHFIGYLPTSLSYCRELKVLSLARNGLTGSIPENYANLSSLLFVSLSNNSIENLSGAVSVMQQCKNLTTLILTKNFHGEEIPKSATVGFESLMVLALGNCGLKGHIPSWLSNCRKLAVLDLSWNRLNGSVPSWIGQMDSLFYMDFSNNSLTGEIPKSLTELKGLMCANCNRANLAAFAFIPLFVKRNTSASGLQYNQASSFPPSIYLSNNILSGNIRPEIGQLKALHVLDLSRNNITGTIPSTISEMENLESLDLSYNDLSGEIPPSFNNLTFLSKFSVAYNRLEGSIPTGGQFLSFPSSSFEGNQGLCREIDSPCKIVNNTKPIISSGSSKKLGRSNVLGITISIGIGLALLLAIILLRMSRRDDDKPIDNYDEELNGRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDESAALKWDARLKIAQGAARGLAYLHKGCEPFVVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVFWVFQMKSENKEQEIFDPAIWHKDREKQLLEVLAIACKCLDQDPRQRPAIEVVVSWLDCVRFDGSQQ 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00748 1170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1011 1023 IPR008271 GO:0004672|GO:0006468
Phco10g00748 1170 ProSitePatterns Protein kinases ATP-binding region signature. 895 917 IPR017441 GO:0005524
Phco10g00748 1170 SUPERFAMILY L domain-like 666 795 - -
Phco10g00748 1170 FunFam Leucine-rich repeat receptor-like kinase 153 273 - -
Phco10g00748 1170 SMART LRR_typ_2 696 719 IPR003591 -
Phco10g00748 1170 SMART LRR_typ_2 391 414 IPR003591 -
Phco10g00748 1170 SMART LRR_typ_2 720 743 IPR003591 -
Phco10g00748 1170 SMART LRR_typ_2 223 247 IPR003591 -
Phco10g00748 1170 SMART LRR_typ_2 511 534 IPR003591 -
Phco10g00748 1170 SMART LRR_typ_2 463 487 IPR003591 -
Phco10g00748 1170 Pfam Leucine rich repeat 441 500 IPR001611 GO:0005515
Phco10g00748 1170 Pfam Leucine rich repeat 678 733 IPR001611 GO:0005515
Phco10g00748 1170 Pfam Leucine rich repeat 539 599 IPR001611 GO:0005515
Phco10g00748 1170 Pfam Leucine rich repeat N-terminal domain 152 189 IPR013210 -
Phco10g00748 1170 SMART serkin_6 889 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00748 1170 FunFam Phytosulfokine receptor 1 852 964 - -
Phco10g00748 1170 ProSiteProfiles Leucine-rich repeat profile. 722 744 IPR001611 GO:0005515
Phco10g00748 1170 FunFam Leucine-rich repeat receptor-like protein kinase 965 1170 - -
Phco10g00748 1170 Gene3D Phosphorylase Kinase; domain 1 854 964 - -
Phco10g00748 1170 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 77 336 - -
Phco10g00748 1170 Pfam Protein kinase domain 890 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00748 1170 Gene3D Transferase(Phosphotransferase) domain 1 965 1165 - -
Phco10g00748 1170 FunFam Tyrosine-sulfated glycopeptide receptor 1 460 794 - -
Phco10g00748 1170 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 361 456 - -
Phco10g00748 1170 SUPERFAMILY RNI-like 343 643 - -
Phco10g00748 1170 Gene3D Ribonuclease Inhibitor 483 796 IPR032675 -
Phco10g00748 1170 SUPERFAMILY L domain-like 149 430 - -
Phco10g00748 1170 Gene3D Ribonuclease Inhibitor 382 482 IPR032675 -
Phco10g00748 1170 Gene3D Ribonuclease Inhibitor 149 381 IPR032675 -
Phco10g00748 1170 ProSiteProfiles Protein kinase domain profile. 889 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00748 1170 SUPERFAMILY Protein kinase-like (PK-like) 871 1160 IPR011009 -
Phco10g00748 1170 CDD STKc_IRAK 895 1161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00748 Phco-Chr10 9289578 9293140 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Phco10g00748 Pkinase 6.6e-44 CL0016