Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00746 ATGGACATCAAGAGCAGAGATAGGAGGCAAGTGTCAATTGAAAAGGTGAGGAGAGACAGCCCGGTTGAAGTAGAAGATGAGGAAGAGGAGGAGGATGAAAGTGTGGCTGGAGGTGAGGGACTTCTTGCAGAAGATGAGAGGAGGAAGGGTGGTGCAGGTGGTGGGAGAAGAGGGTCTACAGGAGGTGGAGTTTCTCCACCTGCTTGTCAGGCTGAGATGTGTTGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTTTTGTGATGGTTGCAGGAATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGACGAAGCTAAAAGAAGCTGCCGGAGACGGTTGGCAAGACACAATGAGCGGCGCCGGAAGAGCAATGCTGAAACTTGCAATGAAGGATGCAGCGGCAGCAAAGGGCAGCACCCTGCAGAAAGCCTCTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTACAGGTCCTTCCACTTCAGATGA 573 0.5131 MDIKSRDRRQVSIEKVRRDSPVEVEDEEEEEDESVAGGEGLLAEDERRKGGAGGGRRGSTGGGVSPPACQAEMCCADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHPAESLCRNADDWGRIQMNMARNSGYRSFHFR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00746 190 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
Phco10g00746 190 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Phco10g00746 190 Coils Coil 119 139 - -
Phco10g00746 190 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Phco10g00746 190 Pfam SBP domain 69 142 IPR004333 GO:0003677
Phco10g00746 190 MobiDBLite consensus disorder prediction 23 39 - -
Phco10g00746 190 MobiDBLite consensus disorder prediction 1 65 - -
Phco10g00746 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 146 IPR044817 GO:0003677
Phco10g00746 190 MobiDBLite consensus disorder prediction 1 22 - -
Phco10g00746 190 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00746 Phco-Chr10 9249624 9250585 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco10g00746 SBP 2.7e-30 No_clan