Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00742 ATGGACTCCTCCTACCACCACTTGGACCACACTGAAGCTCACCTGCCACCTGGCTTTAGGTTCCACCCCACTGACGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTTTAGACAGCACCTTCACTGGTAGAGCCATAGCTGAAGTAGACCTTAACAAGAGCGAACCATGGGAGCTACCAGAGAAAGCTAAAATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTACGAACCAATAGGGCTACTGAAGCTGGTTACTGGAAAGCCACTGGGAAAGATAGAGAGATTTACAGCTCCAAGACCTCTTCTTTGGTCGGGATGAAGAAAACCTTGGTTTTCTACCGTGGTCGAGCTCCCAAGGGGGAGAAAAGTAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTATCTCGCAACTCCAAGGATGAGTGGGTCATATCGCGCGTGTTCCAAAAGAGCAACACAACCAACGGCGGCTCCGCCATGTCTGCTTCGAGTGGCTCCAAGAAAACAAGAATGAATACCACCATCAGCTCTCTCTGCCCAGAACCAAGTTCACCCTCTTCAGTTTACCTTCCGCCTCTTTTAGACTCACCGTACGCCAACACGACCACCGCGGTCAACTTCACTGGCCGTAACAACTGTTCCTATGACAGCACCACAAAAAAGGAGCACGTGTCCTGTTTCTCCACAATCGCTGCAGCCACCGCTGCTGTTGTCTCCCCAAACAACTTCACCAATGCAAGCTTCGACCTTCCACCATCTCAGCCTCTTGGAACGGATCCCTTCGCTAGGTTTCAGAGAAACGTTGGCGTATCCGCCTTCCCAAGTTTGAGGTCACTGCAAGACAACCTTCAGTTACCGTTCTTTTTTCCACCAGCAGCACAGCCCTTCTCCGGCGGTGGCTCCGGTGATCTCCTCTGGCCGATGCCGGAGGAGCAAAGGCTGGTTGATGCGGCATCCAACGTTCCACTGGGGGTGTCGGAGCTTGATTGGCTAGTTGATGCAAGGGTAGTTTGGGTATTATGTGGTAGTGTTGTGTTGTGGGTTTCAGATCGTGTGGGGTTTGATTTTGATCTTTGGACCATTGCAGGATTTGTGTCTCTAGAAATCTTTGCGCTTTCTGTGTTTGAGCTATCATCTATGGACCGTTATAGAATTACAAATGTTTGCGTTTCTGACGTGTGGGTCTTCTAA 1242 0.4992 MDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTSSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTTNGGSAMSASSGSKKTRMNTTISSLCPEPSSPSSVYLPPLLDSPYANTTTAVNFTGRNNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNFTNASFDLPPSQPLGTDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFPPAAQPFSGGGSGDLLWPMPEEQRLVDAASNVPLGVSELDWLVDARVVWVLCGSVVLWVSDRVGFDFDLWTIAGFVSLEIFALSVFELSSMDRYRITNVCVSDVWVF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00742 413 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Phco10g00742 413 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Phco10g00742 413 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 223 - -
Phco10g00742 413 FunFam NAC domain-containing protein 100-like 24 171 - -
Phco10g00742 413 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Phco10g00742 413 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00742 Phco-Chr10 9091659 9093905 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco10g00742 NAM 1.6e-40 No_clan