Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00686 ATGTTGATCAGCAACGAGGTAGAGGATTTGTTTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAGATTTTTTCAGAGGTCTTTTCTGGTAATGACATTTTTCAGTCTACTCAGAAATGTCTTGTTCCTGGGGTTATCAGCTTTGAACATGAATCTGCTAAAAACACATTTAAATCATTCTGCTCTAGTAACGAAAACTCAGTTGCATTGCATCCCTCGTCTTCTAGACTTACACACCCTGAAGAGGAGAACTTTAATGTAATTCAGCATTCCAAAGAGGCTGCTCCGGGATGTATGCCAGAGAGTTTGATTTGTGAAGACCAGAATGACGAGGATGTGAATGTCAAACGAATGAAATTTTCTCTGCATGAACTTGCTTGTAGTAGATCTGATTCAGAAAAAAATTTGAGTTCATCACGACTTTCAAAAGTAGCAGTTTCTAACCTGTCTTCTGCTGCTACAGGCTGTGATAGTGAACCAATTGCATTTCGGTTGGTTGAATCATCCAAACATGGTGTGATATCTAGTTGTTATCTATTGAACCATAACAATCTAAATAAACAAGCTGTTAAGGATGATGTAGATGTTACAAATTTTAACACAGCAACAGTACACAGACATATTGCAAAAGAAGTGTCTATAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCGAGCAGGCTTGTAGTTACAAGTCCGTCAATCACTGTTGTGAAGAAATCTGGGTCTCCTTTAAATCCTGAGGAAATGCCGGAATCTACTAATGTGGACATCTCAAATTCACCCTCAATGCTACAGGAAGAGGACCCTCGTACTATTCTGCAGTTTCAGATTGTTCAGTTGCTTACGATGGCAGGGTGGACTATTGAGAAGCGACAACGGCCTAGCAGACGTTATCCAGAGTCAGTTTACAGGACACCAGAGGGAAAGCCTATTCGGGAATTTACAAAGGCTTGGAGAATATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTTATGTGCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGAAAAAACAAAGATGCAGTCAGAAGACCCTGCTGCTATGTTGGCTTATCGATGGTGGCTTTTGGATCCGTTTGTAGTTGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGGGAGGTAGTGAAAGCAACTTGGACTTTAGTTTCTAGTAAGTATAAGGTGGCATGTGCTCCCATTGATTCGAGCTCTGGAAATTCGAATCAGGTACCTGGAGGGTCTAATGTAAATGCTGGTCAACAAGCCAAAATTAGAAATTCTAGAAGTCTTGATAAGCAGAGTTCAGAAAACTATCTGGAAACAAATAATATTATTGATGGACACGTGCCAATGGACACGTCAGAAGAAAATAACGCATCCGGTGTGAGCTATGGCCTGGTTCATTCTCACGGCTCAAGGACCATGCAACAGTCTGAATGTAGTGAGGAAGAGGGTGGGAAAACCTTAGTAGATTCTGCATTTGGGAAAGATAGCACATATTCTGTTTCTAATGTTATTCTTAGAAAGAAAATGCGAAGGAAGTGCAAAAGGGTATCTGAAATTAAAATGAGTATGTTCTGCCATGGTGACATGCTGGGCTCAACTGTCACTGATCAGGTGCAGTCACTAGATGGTGAAGCATGTGGTTTGGAAGAGGTCCAGAATTATATAGGTGACAATGCTGGAAAGAAAAGAAGCTGCAGAAAGTTGTCATCTTTCAGTGCAATTCAGAGAAATACCAGGAAAACAAACGGCTCCATAACTGGAACGGATAGGTCTAACAGATGCCATATTAAAGATGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCGGCCCAAAGGCAATCCGGGGAAGTTCTAGAGCTAAATCTTGCAAATCAAGGGGCCAGAGAAAGCTTAAAAGCCAAAAGGGTCGTTGCAGGTTGCTGCCAAGGAACCCCTGTAATGCAGGGAAGTACAATAAGGACTGTAATAGGTCTTATTTGGGTTCAAGGACAATATTGTCCTGGTTAATTGATAACGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAATACTAAGGATAATGTTGTCATTAAGGATGGCAGGATCACCAAAGATGGTATTATATGTATGTGTTGTGGTAAGGTGCTTACATTATCTGAGTTCAAGTTGCATGCTGGGTTTACATTGAATCGCCCCTGCGTAAATATTTTTATGGAGTCTGGTGAGCCCTTTACATTGTGCCTCCTTCAGGCTTGGTCAGCTGAATACAAATCCAGGAAAAGTCTGAATCAAGCTGTGCAGGCTGATGATAATGACAAAAATGATGATTCATGCGGGTTGTGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAATTGTCCATCTACTTTCCACGTAGCTTGTTTGTCTACTCAGGAGATCCCAGACGGTGACTGGTACTGTGCAAACTGCACTTGTAGGATATGTGGAAATTTGGTTACTGATAAAGACACTTCCGATCTGCATGATTTGTTACAATGTTCACAGTGTGAACATAAATATCACGAGACATGCCTTAAAGATAGAGAAACACGAGAAGTAGCAGTCTCAGTCTCGGACATTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTGTATTCTGGACTTCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGGCATCTCATGGACGCTTCTTAGATGCATTCATGATGACCAAAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACGAAATTAGCAGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCAATGCTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCATGGTATTGGAAAAACAGGATGTTTTAGTATCTGTGGCATCTATTAGGGTGCATGGAACTGCAGTAGCAGAGATGCCTCTTATTGCTACTTGCAGTCGGTATCGTCGCCAGGGAATGTGCCGATTGCTTGTGACTGCTATCGAAGAGATGTTAACATCTTTCAAGGTGGAAAGGCTTGTGATATCAGCCATTCCTGATTTGGTTGAGACATGGACTAAGGGCTTTGGATTCAAACCCGTTGATGATGTTGAAAGGAAAAGATTGAATAAGTTTAACTTGATGATCTTTCCCGGGACAGTGTTTCTTGAGAAACCGTTACACCGAAAGATGAAAAATGAAGATGAAACAGGAATGTGTGATGAATCAACTCAAGCGACTGATGAATCCGTCAAAGTAGGTATCAGTTCTGAAGGAATGGCCATTACTGACTCATTGCTACAAGATGTTGTAAACATAACTACTGGCAATCAAATTGAACCAAAGTCAGAACATGAACCTGTGGATGGTAAAAGTCAGTCTGACCATAAAGCTGGCAGTGATACCCTCAGAAAAGACAATACACAACCTGTTGACACTGCATTACAAGCCAAAGAATCAGCAGAAATAAGTAGTAGCTGTTTTACAGAAGAGATCATCCAGTTGACAGTGTCAGCTGGCTCAGAGAAATCTATTGAAGAGAATAGTGTGAAGGAACTCGGAACATGCAACAAAGTGGAAATGGAAATGGAAAGTGATTCAGTGCAGCAATCTAGTGAGAATTTTTGTGCTATCAAAGATGGTGCTGAACCAAGTATAAGGGTTGTTGAGGACAAGAATATCAAAGTAGGTGAGGGTCAGGAAAATGCTTTGCAGGGCCCTTTTTCAAATCTATCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAGTATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAGTCTGCAAGCTGA 3960 0.4081 MLISNEVEDLFDDNFEGSNEERQIFSEVFSGNDIFQSTQKCLVPGVISFEHESAKNTFKSFCSSNENSVALHPSSSRLTHPEEENFNVIQHSKEAAPGCMPESLICEDQNDEDVNVKRMKFSLHELACSRSDSEKNLSSSRLSKVAVSNLSSAATGCDSEPIAFRLVESSKHGVISSCYLLNHNNLNKQAVKDDVDVTNFNTATVHRHIAKEVSISKAAASPVSQESFASRLVVTSPSITVVKKSGSPLNPEEMPESTNVDISNSPSMLQEEDPRTILQFQIVQLLTMAGWTIEKRQRPSRRYPESVYRTPEGKPIREFTKAWRICGELLSVEKCNFMCRDYKEWTDISQFWSDLSSALINVEKTKMQSEDPAAMLAYRWWLLDPFVVVIFVDRKIGALKKGEVVKATWTLVSSKYKVACAPIDSSSGNSNQVPGGSNVNAGQQAKIRNSRSLDKQSSENYLETNNIIDGHVPMDTSEENNASGVSYGLVHSHGSRTMQQSECSEEEGGKTLVDSAFGKDSTYSVSNVILRKKMRRKCKRVSEIKMSMFCHGDMLGSTVTDQVQSLDGEACGLEEVQNYIGDNAGKKRSCRKLSSFSAIQRNTRKTNGSITGTDRSNRCHIKDDDLLVSAIFRNKDFGPKAIRGSSRAKSCKSRGQRKLKSQKGRCRLLPRNPCNAGKYNKDCNRSYLGSRTILSWLIDNGVISLNDVIQYRNTKDNVVIKDGRITKDGIICMCCGKVLTLSEFKLHAGFTLNRPCVNIFMESGEPFTLCLLQAWSAEYKSRKSLNQAVQADDNDKNDDSCGLCGEGGELICCDNCPSTFHVACLSTQEIPDGDWYCANCTCRICGNLVTDKDTSDLHDLLQCSQCEHKYHETCLKDRETREVAVSVSDIWFCGQSCQEVYSGLQSQVGLVNQVADGISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTMVLEKQDVLVSVASIRVHGTAVAEMPLIATCSRYRRQGMCRLLVTAIEEMLTSFKVERLVISAIPDLVETWTKGFGFKPVDDVERKRLNKFNLMIFPGTVFLEKPLHRKMKNEDETGMCDESTQATDESVKVGISSEGMAITDSLLQDVVNITTGNQIEPKSEHEPVDGKSQSDHKAGSDTLRKDNTQPVDTALQAKESAEISSSCFTEEIIQLTVSAGSEKSIEENSVKELGTCNKVEMEMESDSVQQSSENFCAIKDGAEPSIRVVEDKNIKVGEGQENALQGPFSNLSCKTFLGSNFDTDSSIECSVMYDETAFFGTFAKSAS 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00686 1319 CDD PHD2_CHD_II 800 840 - -
Phco10g00686 1319 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 953 1092 IPR000182 GO:0016747
Phco10g00686 1319 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 952 1076 IPR016181 -
Phco10g00686 1319 Pfam Tify domain binding domain 723 773 IPR032308 -
Phco10g00686 1319 Gene3D - 948 1084 - -
Phco10g00686 1319 MobiDBLite consensus disorder prediction 244 267 - -
Phco10g00686 1319 MobiDBLite consensus disorder prediction 426 458 - -
Phco10g00686 1319 ProSiteProfiles Zinc finger PHD-type profile. 798 843 IPR019787 -
Phco10g00686 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 843 901 IPR013083 -
Phco10g00686 1319 SUPERFAMILY FYVE/PHD zinc finger 793 848 IPR011011 -
Phco10g00686 1319 PANTHER PHD FINGER FAMILY PROTEIN 1 1251 - -
Phco10g00686 1319 SMART PHD_3 800 841 IPR001965 -
Phco10g00686 1319 SMART PHD_3 842 898 IPR001965 -
Phco10g00686 1319 SUPERFAMILY FYVE/PHD zinc finger 841 894 IPR011011 -
Phco10g00686 1319 Pfam PHD-finger 801 842 IPR019787 -
Phco10g00686 1319 MobiDBLite consensus disorder prediction 1154 1175 - -
Phco10g00686 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 842 IPR013083 -
Phco10g00686 1319 MobiDBLite consensus disorder prediction 1149 1182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00686 Phco-Chr10 8155738 8163262 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco10g00686 TDBD 8.5e-17 No_clan