Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00611 ATGGGGAAAGGAAGAGCACCATGCTGTGATAAAACTCAAGTGAAGAGAGGTCCTTGGAACCCTGCAGAAGACCTTAAACTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGTGCCCTCCCAAAACAAGCTGGACTTCTGAGATGTGGAAAAAGTTGTCGATTGAGATGGATCAATTATCTAAGACCTGATGTGAAGAGAGGCAATTTTACACCAGAGGAAGAGGAAACCATAATAAGGCTACACAAGACCATGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGAAGGACAGACAATGAGATCAAGAATGTGTGGAACACCCACTTAAAGAAAAGGTTGGTTCCTAAAAGAAGTTCAGGATCAAGGACAGATGAATCCAAACCAGAATCAACAATAACTTCCACCTCTTCCTCTTCATCTCAGTCATTTTTCTCAAATGAGAGGCCTAGTTCACCTAAGACCACAACACCTTATAATGAATGTTATGACCAAGCTGATCAATTATCAATGGGAGAAAAAATTGAGCAGGATTCAGAAAAACAAGTGTCCAGTGAACTAATTGGCATGACTGAGGATCCAAAAGAGTCATCAGCTTCATTATCTTGTGAGACAAATATTATAAACTCGAGCCAGAATGTTGCTCACAAAACAGAACAACAATTGGCTTCTCCTTTATCAGTTTCAATATATTCTGTTGAGACTAATGATGTAAATTCAGGCCAGATAGTAGCACACAAAGCAGAACAACAATTGGCTTCTCCATTATCCTACCTAGGACCTTGTGACGTTGGCCGTATTTTAGAAGAGGTGGATAAACCAAACCACCTGATTGAAATTCCATGGGAACCAGATTATGAGTTTTGGAAGTTGTTAGATGATGATAGCCTTGGATCTTTTCAATCAAACGAAGTCCAATTAGGTGAGTTCCCAGCCAACCAAAACATGATTCTTGAAGAGGATGTTCAAGATGCTGAAGCCAGGAAGTGGTCCCATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGGTAAAGGAGTCAAACAAGGATCATTTCCTACCAAAGAACTATGCAGTTGAGCCACAAATGGACCACACTCATGCATTTGATTTCGATGATATGACACGAGCAGAATCCGAATTGGACTTTGATAATATCCAATTATGGCCCTTTTGGCCTCAAAATACTAGTCTCTAG 1209 0.4061 MGKGRAPCCDKTQVKRGPWNPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIRLHKTMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLVPKRSSGSRTDESKPESTITSTSSSSSQSFFSNERPSSPKTTTPYNECYDQADQLSMGEKIEQDSEKQVSSELIGMTEDPKESSASLSCETNIINSSQNVAHKTEQQLASPLSVSIYSVETNDVNSGQIVAHKAEQQLASPLSYLGPCDVGRILEEVDKPNHLIEIPWEPDYEFWKLLDDDSLGSFQSNEVQLGEFPANQNMILEEDVQDAEARKWSHDFENEFGVVGEVKESNKDHFLPKNYAVEPQMDHTHAFDFDDMTRAESELDFDNIQLWPFWPQNTSL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00611 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Phco10g00611 402 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Phco10g00611 402 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Phco10g00611 402 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Phco10g00611 402 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Phco10g00611 402 SMART sant 15 65 IPR001005 -
Phco10g00611 402 SMART sant 68 116 IPR001005 -
Phco10g00611 402 Gene3D - 70 145 - -
Phco10g00611 402 Gene3D - 16 68 - -
Phco10g00611 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Phco10g00611 402 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Phco10g00611 402 MobiDBLite consensus disorder prediction 117 165 - -
Phco10g00611 402 MobiDBLite consensus disorder prediction 130 165 - -
Phco10g00611 402 CDD SANT 71 114 IPR001005 -
Phco10g00611 402 CDD SANT 18 63 IPR001005 -
Phco10g00611 402 FunFam MYB transcription factor 70 145 - -
Phco10g00611 402 FunFam Transcription factor RAX3 9 69 - -
Phco10g00611 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00611 Phco-Chr10 6808589 6811025 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco10g00611 Myb_DNA-binding 1.5e-12 CL0123