Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00602 ATGGGTGTGAACGAAAATTTCAACAAGGATGATCATCATGAGTGTGTGGATGATGATGAAATTCCACTTCCCGGATTTCGATTCCACCCCACAGATGAAGAGCTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGCATCGACCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAAAGCAGTGGCAGTAGAGGAGAGAAGGAGGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAACAGAGTCACTGGCTCTGGGTTCTGGAAAGCAACTGGCATAGACAAGCCAGTGTACTCATATGGAGGAGAAGGCAATGACTGCATTGGACTCAAAAAAACCCTAGTGTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGACTTCCTTCTAACACAGATACCAACACAAGCCTTCCCAACTCCAGGAACTATGTAGATGTTCCCCAAGAAGCTGAAATTTGGACGCTGTGTAGAATTTTCAAAAGAAATGTGTCACAGAGGAAGCACGTGCCGGACTTGAAACAAGTATCTGCTAAGCGCCATGCATTTTACGAGAAGAGCTCCAGAACGAGCAATGTGGAGTTTGACAGTGCTAATCAAGAATCGTATATAAACTTTGGTGGACACTATCAGAACGAGCAGAAACCCTTCGTCAACTATACAAACAGTGATAAAAGGAATCAGTTTAATGTGATGAGTCAGTTGTTTTCTACGGTGGCACAGCAGCAACCTCAACTAACTGCACCATCTTCTAACCTTTGGAGTAACCCACCTGGGAACGATTTCTTCACCTTCGATAACTGGGATGAACTTGGATCTGTAGTGAAGTTAGCTGTTGATTCGCCTAGCTTGTAG 927 0.4423 MGVNENFNKDDHHECVDDDEIPLPGFRFHPTDEELVSFYLRRKLDKKPISIDLIKQIDIYKYDPWDLPKSSGSRGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSYGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTSLPNSRNYVDVPQEAEIWTLCRIFKRNVSQRKHVPDLKQVSAKRHAFYEKSSRTSNVEFDSANQESYINFGGHYQNEQKPFVNYTNSDKRNQFNVMSQLFSTVAQQQPQLTAPSSNLWSNPPGNDFFTFDNWDELGSVVKLAVDSPSL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00602 308 ProSiteProfiles NAC domain profile. 22 186 IPR003441 GO:0003677|GO:0006355
Phco10g00602 308 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Phco10g00602 308 SUPERFAMILY NAC domain 23 186 IPR036093 GO:0003677|GO:0006355
Phco10g00602 308 FunFam NAC domain-containing protein 35 31 189 - -
Phco10g00602 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 257 - -
Phco10g00602 308 Gene3D NAC domain 31 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00602 Phco-Chr10 6648201 6650256 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco10g00602 NAM 1.5e-34 No_clan