Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00570 ATGAAATCTGGCAGAGACAAAGAGAAACAGAACAATCGTTGCATCAGTTCGCATATGCAGACCCTCCATCGCCGTCTTCTCCACACCCTAAACCTTGGCAACAGACATTTTGATGAGAAGACAAATAGGTGGAGGTGGCAGTGCGCCAACATTGAAGTGCAGAAAAATGTATTACGATCAATTGGTGCCTTTCTTGATTCCTTATCGGGAGATGCACGTGCAGCACGTCATGCTGTTGTTAAGGAATCTGTTCCTGATATTTTGGGAGCATTATTATGGATTCTTCAATGCAAAAGTGAGGCCTTACTAAGCATGGCATCAACTGTTGCAGTGAAGTTAGTTAGTGTTCTGCCTAATCCATTATTGCAATCACATACGTTGGATCTTGTTTATTGTCTATCATCCTTGCTATCTTCACATCAAGAAGTTGCTATACCCTGTGCTACCGCTTTGAATTTTGTAATCTCAAATTTGAGTGCTACAAGTGAGAAGGAAGTTATGGAAGCACTGAAAGAAATGGAGACTTCCCTTCAAATTGTTGGAAATATAAAAGATTTTGCCGAAGGTGCAAAGAAAATTGAGTATTTTGAAGAGATGACTTTACTTTTGAGCACTATACTGTGGCGCTGGCCTCCGTCTAGGTTCCCTGTTTGTAATGATGTAATACTTATGAAAGGTTTAGCAAACATCCATGCAAAGACAGATAGTTCTACTAAACTTGCACTTCTAAAGTTGTACACGTCTATAGCTTTATGTGATTCTGCAGCAAGAAAACTTATAAAGGATGAAGAAGTATTTCCACTAATGTTTGTGCAGGCAATGGGAAAATCAAACCCCCATGCTATTCGGATAGAGGGGTTTAGGCTTGCTCAATGCCTATTGAGATCCCAAGATAATTGTTTAAAAGTGGTTGGTTTGTGTGGTGAAGCTCTTGTTGAGGCCATAATTTGTGGAATGACAGAAACTAGGCTGAGTTCTAAAAAAATTGGAAACAACCATGGGTCTTTGTCTGTGGAAGCATGCCAGTTGGCTCTAATAACTCGCTGGGCAGGTGATCATCATACCAATTTTTGGAAACAAGGAATTGACAGAGTCCTTCTTAATCTTCTGATTGAAAATATTCAAGACCAATTGTTTGAACCTGTCTTGTCATTGGAAAAACAAATATATATGGCAAAAGAGGGATTGAAAGCCAATTATCATCTTGATATTAGGAGTTATCTTTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTTAAACCCTTGTACTCGTGGTAGTGAGCTCTGCATCAACTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCAGAATTTGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCAGTATTAAGGGCTGTTCTAATGATGATTCATTCTCCATGCAATTCCATCTCCTCACACACTAGATTCTTATTATCAGATGTACTAAAGGTGAAAGGCATGCCATGTTTGAAAAGCTTACTACATACTCTAGATTATACATCATCCCTGGAAAGCTATGGATCATTTGATAAACTTCAACTGGTTGTTAATTTAATTGGGTTTACTTGTCTTTCAAGTTTACCACAGTACCAAAGATGTATAATTGAGAGCAAAGGGATAAGGGTGATTGTTCTTCTTCTGAAACGATGCTTAGATAATGACATTCATATTGAAAGGAAGAGCTTTACTCCTCATTTGCATACAACATGCCATGAAAGGTCTTGTTGCTGTTTTGACAAAGGAGATTGGGAAGGTTCCAATGTTCTCTTATTTTATAGTTTGTTGGGCTTAACTGAAATTCTTCATCAGTGTGACCTTTTACGAGAGAATCCTCATCAATTTTCTAGAGAGGTGACAAACATTAGTCCACAGTTAGTTAGCAAACTTCAAGAGATCTGTACAAGCAACTCTTTCAGTCCTGGTGTGAGATGGTATGTTTCTTATCTTCTAACTTATTTTGGATATTACGGTTTCCCAACTGAATTAGCCAAAAGGATTGGGAAATCTCTCAATACGGAAGAATACTCAGATATGAAGCTTGTTGTAGCAAATGGGGAATCTCTGAGTGTTCATGCTGTTATTCTTGCTGTTCGATGTCCATCACTACTGCCTCCTCAATTATTACCTTGTAGGAAGAGTTCTAAAGAGATAGCAGATAATTTTGTTAGAGAGACCATGAGAGAAGTTCGATTATCTTCTCATGTTGATTATGAAGCATTGGTATTATTGTTGGAATATGTGTACTTGGGATGCTTACATGCCAGTGAAGAAACAGCAAAGAAGCTAAAAATTCTCGCTAAGCGCTGCAATCTACAACCTTTGTTCCAAATGCTTCACAGACATTGTCCAAAGTGGGGCTTACCTTTCCCCAGCTTCAATCTTACTTCATCTTTTGGTTTAGCTGGAAGTTGTTTTTCGGATGTCATATTGGCAGCTAAATCAAACGAGCTTGTTGGGTGGACATGCAATATTTGTTCTAACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTGATTATCTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGTCATTCACAAGTAATAAAAGTTGATATTAGCTGGCAAGCATTGATTAAACTCGTGCAGTGGTTTTATTCTGATGAGCTGCCTGATCCTCCCTCTGGATGCTTGTGGGATAATATGGATGATAAAGAAAAGCTATTTAATCTACAACCATATGTGGAGCTTTATTGGCTTTCTCAGTTCTGGATTTTGGAAAATATTCAGGAAGCTTGCTGGAATGTTATTATGTCTTGTCTTGATTCTTCCTGGCGGTTGTCCATTAAAATAATCAAAATGGCTTATAATTTATCTTTGTGGAAGTTAGTTGATATCGCGGCAAATCTCATGGCTCCTTCATATCGTCTATTACGAGATTCTGGTGAACTAGAAGAATTTGATGATGCGCTAGTTCACTTGATTTATTCTGCTTCTATTCAACTTAACTAA 3033 0.3805 MKSGRDKEKQNNRCISSHMQTLHRRLLHTLNLGNRHFDEKTNRWRWQCANIEVQKNVLRSIGAFLDSLSGDARAARHAVVKESVPDILGALLWILQCKSEALLSMASTVAVKLVSVLPNPLLQSHTLDLVYCLSSLLSSHQEVAIPCATALNFVISNLSATSEKEVMEALKEMETSLQIVGNIKDFAEGAKKIEYFEEMTLLLSTILWRWPPSRFPVCNDVILMKGLANIHAKTDSSTKLALLKLYTSIALCDSAARKLIKDEEVFPLMFVQAMGKSNPHAIRIEGFRLAQCLLRSQDNCLKVVGLCGEALVEAIICGMTETRLSSKKIGNNHGSLSVEACQLALITRWAGDHHTNFWKQGIDRVLLNLLIENIQDQLFEPVLSLEKQIYMAKEGLKANYHLDIRSYLWDILGWLTIHCGENLNPCTRGSELCINLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVLRAVLMMIHSPCNSISSHTRFLLSDVLKVKGMPCLKSLLHTLDYTSSLESYGSFDKLQLVVNLIGFTCLSSLPQYQRCIIESKGIRVIVLLLKRCLDNDIHIERKSFTPHLHTTCHERSCCCFDKGDWEGSNVLLFYSLLGLTEILHQCDLLRENPHQFSREVTNISPQLVSKLQEICTSNSFSPGVRWYVSYLLTYFGYYGFPTELAKRIGKSLNTEEYSDMKLVVANGESLSVHAVILAVRCPSLLPPQLLPCRKSSKEIADNFVRETMREVRLSSHVDYEALVLLLEYVYLGCLHASEETAKKLKILAKRCNLQPLFQMLHRHCPKWGLPFPSFNLTSSFGLAGSCFSDVILAAKSNELVGWTCNICSNTVPHMHVHKVILQSGCDYLQGLFRSGMQESHSQVIKVDISWQALIKLVQWFYSDELPDPPSGCLWDNMDDKEKLFNLQPYVELYWLSQFWILENIQEACWNVIMSCLDSSWRLSIKIIKMAYNLSLWKLVDIAANLMAPSYRLLRDSGELEEFDDALVHLIYSASIQLN 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00570 1010 SUPERFAMILY POZ domain 801 946 IPR011333 -
Phco10g00570 1010 ProSiteProfiles BTB domain profile. 820 901 IPR000210 GO:0005515
Phco10g00570 1010 PANTHER OS06G0674800 PROTEIN 5 1009 IPR044953 -
Phco10g00570 1010 ProSiteProfiles BTB domain profile. 690 770 IPR000210 GO:0005515
Phco10g00570 1010 Pfam BTB/POZ domain 683 796 IPR000210 GO:0005515
Phco10g00570 1010 Pfam BTB/POZ domain 845 905 IPR000210 GO:0005515
Phco10g00570 1010 SUPERFAMILY POZ domain 670 795 IPR011333 -
Phco10g00570 1010 CDD BTB_POZ_ZBTB_KLHL-like 819 902 - -
Phco10g00570 1010 Gene3D Potassium Channel Kv1.1; Chain A 672 795 IPR011333 -
Phco10g00570 1010 Gene3D Potassium Channel Kv1.1; Chain A 814 985 IPR011333 -
Phco10g00570 1010 SUPERFAMILY ARM repeat 19 423 IPR016024 -
Phco10g00570 1010 SMART BTB_4 820 948 IPR000210 GO:0005515
Phco10g00570 1010 SMART BTB_4 690 800 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00570 Phco-Chr10 6247532 6262207 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco10g00570 BTB 1.4e-06 CL0033