Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00553 ATGACTTGTTTTCCTTTATTATTCAGTAAGTCATATTCTTCAGCGAGTAAAGATCCAGAAATTGATGAAGGCATTGATAATGTTAAGCTGTACTCCCACAAAGAATTAAGAAATGCCACTGACGATTTCTGTGAAGCCAACAAAATCGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACAACTTAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTGCAGCTGATTCTAGACAAGGAGTGAAGGAGTTCTTGACAGAGATTAATGTGATCTCAGAGATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGTAGTGTGGATAAAAATAAAAGAATATTAGTCTACAATTACCTTGAGAATAACAGCCTGTCGCAAACTCTTCTAGCTGGAGGTCACAGTAGGATCTACTTTGATTGGCGAACAAGATGTAAAATAAGCATTGGGATTGCTCGTGGACTGGCTTACCTTCATGAAGAAGTAAGGCCTCATATTGTTCACAGGGATATAAAAGCTAGCAACATCCTCCTTGACAAAGATCTTACGCCCAAAATTTCAGATTTTGGTCTGGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACTCGAGTAGCAGGAACAATAGGTTATTTGGCACCCGAGTATGCAATAGGAGGGAAGCTGACAAGGAAAGCAGATGTTTACAGCTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGAAGATGTAACACAAACTCGCGATTACCAATAGAAGAACAATTTCTTCTAGAGAGGACTTGGGAACTTTATGAGAGAAAGGAATTGGTCGGACTGGTAGATGCATCACTGGACGAATTCGATGCTGAGCAGGCTTGTGAGTTTATGAAGATTGGTCTTCTTTGCACTCAGGAATCGCCAAAGCTACGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACTGGAAAAATGAATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTTATGGACCTCAAAGTAAGAAGGAACGAAGAAAGTAGTACTGATGTGAAGAATTCATCTATGTACAATACAACCTCTTCTTCAGACAACCATGACACTACCATGTCATCTGCCACAACTACAACTTTCGCTGCAATATATGATGAAAGCTTGTGA 1152 0.4002 MTCFPLLFSKSYSSASKDPEIDEGIDNVKLYSHKELRNATDDFCEANKIGEGGFGSVYKGQLKDGKVAAIKVLAADSRQGVKEFLTEINVISEIEHENLVKLYGCSVDKNKRILVYNYLENNSLSQTLLAGGHSRIYFDWRTRCKISIGIARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNSRLPIEEQFLLERTWELYERKELVGLVDASLDEFDAEQACEFMKIGLLCTQESPKLRPSMSSVVKMLTGKMNVDDSKITKPALISDFMDLKVRRNEESSTDVKNSSMYNTTSSSDNHDTTMSSATTTTFAAIYDESL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00553 383 FunFam cold-responsive protein kinase 1 119 329 - -
Phco10g00553 383 MobiDBLite consensus disorder prediction 341 367 - -
Phco10g00553 383 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 356 - -
Phco10g00553 383 CDD STKc_IRAK 49 315 - -
Phco10g00553 383 SMART serkin_6 43 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00553 383 Gene3D Phosphorylase Kinase; domain 1 13 118 - -
Phco10g00553 383 Pfam Protein kinase domain 46 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00553 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00553 383 FunFam cold-responsive protein kinase 1 14 118 - -
Phco10g00553 383 SUPERFAMILY Protein kinase-like (PK-like) 22 314 IPR011009 -
Phco10g00553 383 MobiDBLite consensus disorder prediction 347 367 - -
Phco10g00553 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Phco10g00553 383 Gene3D Transferase(Phosphotransferase) domain 1 119 330 - -
Phco10g00553 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00553 Phco-Chr10 6067447 6071375 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco10g00553 Pkinase 2.1e-46 CL0016