Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00544 ATGAAGGCATTGGACTGTAGTTTTCACTTCCTTAGTGGAGTTTACATGATGCTGTTGTTTTGCCTTGGCATTGTGCTTGTGAATTCAGTTAATGAAGAGGGGTCTAGTCTTTTGATCTTCAAAGCTTCCCTTCATGACCCAAACAACAATCTCTATAACTGGAATTCGTCTGATTTGACTCCTTGCAATTGGACTGGTGTATATTGCACGGGTTCAGTGGTAACTTATGTGAAACTTTACCAACTTAATCTATCTGGTACTTTGGCTCCTACCATCTGCAATCTTCCAAAGCTGCTCGAGTTGAATTTGTCAAAAAATTTCATCTCTGGCCCAATTCCTGATGGTTTTGCTGACTGTGGTAGTTTGGAGGTTTTGGACCTTTGCACAAATAGGCTTCACGGACACCTTCTGACCCCTATTTGGAAAATCACAACACTTAAAAAGCTCTATCTGTGTGAAAACTATATGAATGATGAAGTGCCAGAGGAGCTTGGGAATTTGGTGTCACTTGAGGAGCTAGTCATTTATAGCAATAATTTAACTGGGAGAATTCCCTCTTCAATAAGAAAGTTGAAGCAGCTTAGAGTTATAAGGGCAGGTCTGAATGCCCTCTCAGGACCAATACCAACTGAAATCAGTGAATGTGAGAGCTTGGAGATATTGGGGTTGGCACAGAATCAGCTAGAAGGTTCCATTCCAAGGGAGCTTGAAAGGCTACAGAACCTCACCACTATACTTCTGTGGCAAAATTCTTTCTCTGGAGAGATTCCTCCTGAGATTGGAAATATTAGTAGCTTGGAATTGCTTGCTTTGCACCAAAATTCACTAACTGGTGGTGTCCCCAGGGAACTGGGAAAGCTGTCCAAGTTGAAGAGGTTGTACATGTACACCAACATGTTGAATGGAACAATTCCACCTGAGCTAGGAAACTGCACAAATGCTATTGAGATAGACCTATCTGAAAATCATTTGATTGGGATCATTCCCAAAGAGTTGGGCCTAATCTCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAACCTGCAGGGTCATATTCCAAGGGAGCTTGGTCAGTTGATGGTGCTAAGAAATTTAGACCTGTCACTAAATAACTTGACTGGTACAATTCCACTGGAGTTTGAAAACCTTACATACATGGAAGATCTGCAGCTATTTGACAATCAACTTGAAGGTGTGATTCCTCCTCAGCTTGGAGCTATTAGAAACCTTACTATTCTTGATATATCTGCAAACAACCTTTTTGGTATGATACCTCTTCATCTTTGTGGATATCAGAAGCTGCAATTCCTGAGTCTTGGGTCAAATAGGTTGTTCGGAAATATTCCTTATAGCCTGAAAACGTGCAAATCTCTTGTGCAGCTTATGCTGGGGGACAACCTGCTGACAGGAAGCCTACCTGTTGAGTTGTATGAACTTCACAATCTTACTGCACTTGAACTCTATCAGAACCGATTTTCGGGGATGATAAACCCCGGGATAGGCCAACTAAGGAATCTAGAGAGGCTTCTCTTGTCAGCTAACTACTTTGAAGGCTATCTCCCTCCTGAGATTGGAAGTTTGACACAACTTGTCACATTCAATGTTTCCTCTAACCGTTTCAGTGGAAGCATTCCTCATGAGTTGGGAAACTGTGTTAGACTGCAGAGGCTTGATCTTAGCAGGAACCACTTCACTGGTATGCTTCCAAATGAAATTGGCAGCCTGGTGAACTTGGAGCTGTTAAAAGTTTCTGATAACATGCTCTCAGGAGAAATACCAGGCACGTTGGGGAATCTTATTCGGCTCACAGACCTGGAACTAGGTGGCAACCAGTTTTCAGGAAGCATCTCTATCCATTTGGGAAGACTTGCAGCTCTTCAGATTGCTCTTAACCTGAGCCACAACAAACTTTCTGGCTCAATTCCTGATAGTCTTGGGAACTTACAAATGCTAGAGTCTCTTTATCTCAATGACAATCAACTTGTTGGTGAGATTCCTGGATCAATTGGTGACCTTCTAAGTCTTGTAGTATGCAATGTATCTAACAACAAGCTAGTAGGATTTGTTCCAGACACCACTACGTTTAGAAAGATGGATTTCATGAACTTTGCTGGAAATAACGGTTTGTGCCGTGTCGGTACCAGTCATTGCCATCCATCTGTATCTTCCTCTCATGCTGCAAAACAAAGCTGGATCAGAAATGGTTCCTCAAGGGAAAAAATAGTGAGCATTGTTTCTGGGGTTGTTGGACTAGTTTCTCTTATTTTCATAGTGTGGATATGTTTGGCTATGAGGCGCCATAGCCATGATGCTTTTGCCTCACTTGAAGGGCAACCTAACACTCATGTCTTGGATAACTACTACTTTCCTAAAGAAGGGTTTACATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCAGAAAATGCAGTTCTAGGAAGAGGAGCTTGTGGCACTGTTTACAAGGCTGTTATGAGTGATGGTGAAGTGATTGCTGTCAAGAAGCTGAATTCGCGAGGAGAAGGAGCAAATAGTGTTGATAGAAGCTTCCTCGCCGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCTAATCTTCTCCTATATGAATACATGGAAAATGGAAGCCTAGGGGAACAACTTCATTCAAGTGCAATCACTTGTGCACTGGATTGGAGTAGTCGATACAAAATTGCTCTTGGAGCAGCAGAAGGCTTATGCTATCTACATTACGACTGCAAGCCTCAAATCATTCACCGTGACATAAAGTCAAACAACATATTACTTGATGAGGTGTTTCAGGCTCACGTTGGAGACTTCGGTTTGGCAAAGTTGATTGATTTTTCTTTCTCAAAATCCATGTCTGCTGTGGCTGGTTCCTATGGCTACATTGCCCCAGAATACGCTTACACAATGAAGGTGACTGAGAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGCTTGAACTAGTCACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGACCTAGTCACTTGTGTGAGAAGAGCCATTCAAGCATCAGTACCAACATCTGAATTATTTGACAAGAGATTGAATCTTAGCGCTCCAAAGACAGTTGAAGAAATGTCTCTTATTCTCAAAATTGCCCTGTTCTGCACCAGTACGTCTCCACTTAATAGGCCTACTATGAGAGAGGTCATTGCAATGTTGATTGATGCCAGGGAATATGTCAGCAACTCTCCAACCTCTCCTACATCAGAATCTCCATTGCATGGGGATGATGCCATTTCTTCCAAAGATGATGGTGTTGAGTTGTAA 3348 0.4223 MKALDCSFHFLSGVYMMLLFCLGIVLVNSVNEEGSSLLIFKASLHDPNNNLYNWNSSDLTPCNWTGVYCTGSVVTYVKLYQLNLSGTLAPTICNLPKLLELNLSKNFISGPIPDGFADCGSLEVLDLCTNRLHGHLLTPIWKITTLKKLYLCENYMNDEVPEELGNLVSLEELVIYSNNLTGRIPSSIRKLKQLRVIRAGLNALSGPIPTEISECESLEILGLAQNQLEGSIPRELERLQNLTTILLWQNSFSGEIPPEIGNISSLELLALHQNSLTGGVPRELGKLSKLKRLYMYTNMLNGTIPPELGNCTNAIEIDLSENHLIGIIPKELGLISNLSLLHLFENNLQGHIPRELGQLMVLRNLDLSLNNLTGTIPLEFENLTYMEDLQLFDNQLEGVIPPQLGAIRNLTILDISANNLFGMIPLHLCGYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNLLTGSLPVELYELHNLTALELYQNRFSGMINPGIGQLRNLERLLLSANYFEGYLPPEIGSLTQLVTFNVSSNRFSGSIPHELGNCVRLQRLDLSRNHFTGMLPNEIGSLVNLELLKVSDNMLSGEIPGTLGNLIRLTDLELGGNQFSGSISIHLGRLAALQIALNLSHNKLSGSIPDSLGNLQMLESLYLNDNQLVGEIPGSIGDLLSLVVCNVSNNKLVGFVPDTTTFRKMDFMNFAGNNGLCRVGTSHCHPSVSSSHAAKQSWIRNGSSREKIVSIVSGVVGLVSLIFIVWICLAMRRHSHDAFASLEGQPNTHVLDNYYFPKEGFTYQDLLEATGNFSENAVLGRGACGTVYKAVMSDGEVIAVKKLNSRGEGANSVDRSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSAITCALDWSSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSFSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTCVRRAIQASVPTSELFDKRLNLSAPKTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDAREYVSNSPTSPTSESPLHGDDAISSKDDGVEL 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00544 1115 FunFam Leucine-rich repeat receptor-like protein kinase 30 183 - -
Phco10g00544 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 771 884 - -
Phco10g00544 1115 Pfam Leucine Rich Repeat 553 575 IPR001611 GO:0005515
Phco10g00544 1115 Gene3D Ribonuclease Inhibitor 29 182 IPR032675 -
Phco10g00544 1115 SUPERFAMILY RNI-like 364 707 - -
Phco10g00544 1115 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 473 1081 - -
Phco10g00544 1115 SUPERFAMILY Protein kinase-like (PK-like) 781 1080 IPR011009 -
Phco10g00544 1115 SMART LRR_typ_2 479 503 IPR003591 -
Phco10g00544 1115 SMART LRR_typ_2 648 672 IPR003591 -
Phco10g00544 1115 SMART LRR_typ_2 287 311 IPR003591 -
Phco10g00544 1115 SMART LRR_typ_2 527 551 IPR003591 -
Phco10g00544 1115 SMART LRR_typ_2 167 191 IPR003591 -
Phco10g00544 1115 SMART LRR_typ_2 575 599 IPR003591 -
Phco10g00544 1115 SMART LRR_typ_2 95 118 IPR003591 -
Phco10g00544 1115 SMART LRR_typ_2 552 574 IPR003591 -
Phco10g00544 1115 SMART LRR_typ_2 335 359 IPR003591 -
Phco10g00544 1115 MobiDBLite consensus disorder prediction 1088 1115 - -
Phco10g00544 1115 Gene3D Phosphorylase Kinase; domain 1 773 884 - -
Phco10g00544 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 184 280 - -
Phco10g00544 1115 Pfam Protein kinase domain 807 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00544 1115 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Phco10g00544 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 281 383 - -
Phco10g00544 1115 Gene3D Transferase(Phosphotransferase) domain 1 885 1097 - -
Phco10g00544 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Phco10g00544 1115 Gene3D Ribonuclease Inhibitor 283 362 IPR032675 -
Phco10g00544 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 409 721 - -
Phco10g00544 1115 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 885 1097 - -
Phco10g00544 1115 ProSiteProfiles Protein kinase domain profile. 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00544 1115 SMART serkin_6 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00544 1115 Gene3D Ribonuclease Inhibitor 183 282 IPR032675 -
Phco10g00544 1115 Gene3D Ribonuclease Inhibitor 363 429 IPR032675 -
Phco10g00544 1115 Gene3D Ribonuclease Inhibitor 430 721 IPR032675 -
Phco10g00544 1115 MobiDBLite consensus disorder prediction 1088 1102 - -
Phco10g00544 1115 SUPERFAMILY L domain-like 33 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00544 Phco-Chr10 5944735 5948752 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco10g00544 Pkinase 3.5e-46 CL0016