Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00488 ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTGCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCTACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAGTTTAGGCTTGGGAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGATGCAAATAGAGGTGCAGAGAAGATTGCATGAACAACTTGAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCAAGGAAAATACATGCAGAGCATACTGGAGAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCATCTGCGGCCACTAACTTAAAGGGTGGTATTGTACCTCATCAAATTCCTGACATGGGGGTGTTGAAGGAGTTTGGTTCCCCTCTCGGTTTTTCTTCTTTTCAAGATCTTGAGAATATTTATGGTGGTGACCAAATTGACCTTCAGCACAATATGGAGAAGCCACCCGTTGATCATGGATTTATGTCAATCAATGATAGTTTGTGTCTGGGGAAGAAGAGATCCAACCCTTATAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTCCAAGATCTGGGAGGGCCAGCCTCATCTTGTCTTGGTCCTCAAGATGACCCTTTCAAAGGCGACCATATTCAGATTACACCACAAGGATCATTGGATAGAGGCAGCACTGACATTGATCCCATGTCAGATATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTAGTGGGGGAAAAAAAGTTTGATACATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCTCCTCTTCAGGCTGAAAGGATGAGTCCTATGATCAGTACTGGTACAATGGCACAAGGTAGAGGCTCACCATTTGGATCTGCATGTGTTGTTGGGATGGATGAGATTGGAAGCAAGCAATAA 1158 0.4611 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGGIVPHQIPDMGVLKEFGSPLGFSSFQDLENIYGGDQIDLQHNMEKPPVDHGFMSINDSLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDHIQITPQGSLDRGSTDIDPMSDIYDSKPVLQGEAVVGEKKFDTSMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFGSACVVGMDEIGSKQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00488 385 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Phco10g00488 385 MobiDBLite consensus disorder prediction 1 20 - -
Phco10g00488 385 FunFam Myb family transcription factor 34 92 - -
Phco10g00488 385 Gene3D - 34 92 - -
Phco10g00488 385 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Phco10g00488 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Phco10g00488 385 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Phco10g00488 385 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Phco10g00488 385 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 183 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00488 Phco-Chr10 4897812 4900225 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco10g00488 Myb_DNA-binding 2.1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00488 10 4897812 4900225 Phco10g00488 10 4897812 4900225 ECH
Phco10g00488 10 4897812 4900225 Phco9g01964 9 44504421 44507902 PCT