Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00486 ATGATGAGTGAAGCTGAAGTTTCAAGTCCAGCTCATTTCTCAAAACGTGATTTGCTTAGGTCTTCATTTATAAATGAGCTGTTGCAAAATCCCAAGTGCTCAGTGTTCTCTGTAGAGAGAGTGTTTCCACAGAACTTAGGGATGGGCCACCGTTGCTGCAGCAAACAGAGGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGAAAAACTTGTCAGGTATATCAACATACATGGACATAAAAGTTGGAGTTCTGTGCCAAAATATGCAGGATTGCAGAGATGTGGCAAGAGTTGCAGGTTGAGATGGATTAATTATCTTAGGCCGGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATAATTGATATTCATAGAATTCTTGGAAACAGATGGGCACAAATTGCTAAACACCTACCAGGAAGAACAGACAACGAGGTCAAAAATTTCTGGAACTCATGCATAAAGAAGAAGCTCATTTCTCAAGGGTTAGATCCACAAACCCACAATCTCCTATCTTCTCATAGAAGAAGCTCAGCATCTACCATCTCCAATATGCATCAAAATTCCAATTCCATTTTCATTATGAGTTCACACACACCAAATGCACCAGTGAAAACTACTTTTCAAACCTTTTCTTCATTACCTAAACCTCCACCAAACATCGTTCAAACTCCCTCCAGCATTGTTACATCTGAATATCAAACATCACCTATTATTTCAAATAAATTCTCATCAGATTTTCCTTGTGAACTATTAATCGACAACGCCTCCAACATTTGTTCACCTTCATATATGAACCCCACTGCAGTAGAATTGTCGAACAATGAAAGCGTTGCTAATTGGGTTTCAAGAGTTAATATTGATGATTTCAGCGCTCAAACACTTGAAGAGGGAACACAAGTGCTGGTGCAGCAAGAGAAGGACAAGATTTGTGAGGATATGGGAACTGATGTGCGAGAAGCTAACAAGGGCTATCTTGAAAGCAGTGCTTCTTTCGAGAGTTCTAACTTTGATTTTGGCTTGTTGGAGAGTGTACTTTCCTCCGAATTCATCTCTCATGATGTCAGTTGTATGGATGAACTTGCATGGAACTTTTAG 1110 0.4 MMSEAEVSSPAHFSKRDLLRSSFINELLQNPKCSVFSVERVFPQNLGMGHRCCSKQRIKRGLWSPEEDEKLVRYINIHGHKSWSSVPKYAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHRRSSASTISNMHQNSNSIFIMSSHTPNAPVKTTFQTFSSLPKPPPNIVQTPSSIVTSEYQTSPIISNKFSSDFPCELLIDNASNICSPSYMNPTAVELSNNESVANWVSRVNIDDFSAQTLEEGTQVLVQQEKDKICEDMGTDVREANKGYLESSASFESSNFDFGLLESVLSSEFISHDVSCMDELAWNF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00486 369 Gene3D - 57 113 - -
Phco10g00486 369 FunFam MYB transcription factor 52 113 - -
Phco10g00486 369 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
Phco10g00486 369 Pfam Myb-like DNA-binding domain 60 107 IPR001005 -
Phco10g00486 369 Pfam Myb-like DNA-binding domain 113 156 IPR001005 -
Phco10g00486 369 Gene3D - 114 190 - -
Phco10g00486 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 162 IPR017930 -
Phco10g00486 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 107 IPR017930 -
Phco10g00486 369 FunFam Transcription factor MYB86 114 188 - -
Phco10g00486 369 CDD SANT 115 155 IPR001005 -
Phco10g00486 369 SMART sant 59 109 IPR001005 -
Phco10g00486 369 SMART sant 112 160 IPR001005 -
Phco10g00486 369 SUPERFAMILY Homeodomain-like 57 154 IPR009057 -
Phco10g00486 369 PANTHER MYB DOMAIN PROTEIN 55 48 337 - -
Phco10g00486 369 ProSiteProfiles Myb-like domain profile. 55 107 IPR001005 -
Phco10g00486 369 CDD SANT 63 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00486 Phco-Chr10 4835774 4838856 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco10g00486 Myb_DNA-binding 1.4e-15 CL0123