Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00484 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGGAAGATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCAAGCAAGGACATGGAGTGGTACTTTTACAGTCCTAGAGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGATACTGGAAAGCCACAGGGAAAGATAGACCAGTGCACTCTCAAAAGAAGCCAGTTGGCATGAAGAAGACATTGGTATACTATAAAGGTAGAGCACCACATGGCCTTAGAACGAACTGGGTTATGCACGAATACCGCTTGATTGAATCAGTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCAAGAAGACGATTCAAATTCCAGCGAAACCCAGTAAAGAAGAAGAACAAGCCGAGGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTAGGAGAAGACTCAAGTGGCACTGAGTTTTCTAGAGAAATGGAAACCGTGGAGGAGAAAATTCTGAATCATGAATACCCTAAATTTCCTTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACCGGTATAGCAGAAGATTTTCAACCACACTTTGCTTGTGATGAAGCAAACAGTGCAACTAACTCATATACAATGGGAATAGGATATCCCAGCAATCTATTTCAGGATGTGGAAATACCTTCTTATGGTGGCATGCATTATCAACTCCCACACACACCTTTGGTGCTGGAAGACTTCCCTCAACTTACATTGCCGGAGACGAAGTCAACGAAGCCAGAAGTGACTGATCCCTGCATGTTATATGACAGATACAGGGACTGTATGAATGGAACGCTAGAAGAGATAATCTCTTTATGTTGCACTCAAGATAATTCCCTCCCTTTTCCCATGCTAGAATGA 1041 0.4352 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYKGRAPHGLRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKTIQIPAKPSKEEEQAEDAKKESMWISEEQMLGEDSSGTEFSREMETVEEKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGIGYPSNLFQDVEIPSYGGMHYQLPHTPLVLEDFPQLTLPETKSTKPEVTDPCMLYDRYRDCMNGTLEEIISLCCTQDNSLPFPMLE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00484 346 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Phco10g00484 346 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Phco10g00484 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 206 - -
Phco10g00484 346 FunFam Nac domain-containing protein 86 15 160 - -
Phco10g00484 346 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Phco10g00484 346 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00484 Phco-Chr10 4817718 4822021 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco10g00484 NAM 1.1e-39 No_clan