Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00446 ATGGATAATCCTGTCTCTCTCTTCATGTCAAATCAATCTTCAATATCAAATCCTGTGAAGATGCCTGATTTACCACCTGAGATGAGCTACAATGTGTCAGAAGAGGCACACCCTAGTGCTCATAGCAGTTGTGCAAATTCAGGAAAGAACTCACCAGCCCATCCCAATAATGTGAACCAAGCAGAAAAAGAGACCTTTACAGCAACAACTGTCCACAATTCAGGAAGTGAAACTGGACACTTAGACCATATTTCAAAACCTGATAATACAAAGTTGGAAGGTAAATCAAGGCCCCAGAGGCTAATCCCACCAAACAGGAACATTTCTGACTTCAACCAACACCAAAGTCCAAGGACAACAAAGAAGCCTAGTCCAAACCCTGATCACCATCATTCAAAGACAATGTCTGTATCAACTCCACATGCAAAGACCCCTGGGAGTGGTGCTAGTTCTCGCAGTGACAGCTTAGAGAGCACAAGTGCACCCATTAGGCCACACACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGGTTTCAAGGTGTGGCCCTCTCAATCTCAGCCACTTCAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGGAGTGTGTACCTTGTGGATCTCAAAGGGACTAGGACCTACTTTGCCATGAAAGTAATGGACAAGGCAGCACTCATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGACCACCCCTTTCTCCCAACTTTGTATTCTTACTTTGAAACTGACAAGTTTTACTGTCTGGTGATGGAGTTTTGTAGTGGAGGTGATCTTCATTCTCTTCGACAGAAGCAACCTAACAAGTGTTTCCCCGAAGAAGCTGCCAGGTTTTATGCTTCAGAGGTTTTGCTAGCTCTGGAGTACCTGCACATGCTGGGCATTGTATACAGAGACTTAAAACCAGAAAATCTTCTAGTGAGAGATGAAGGGCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTCAGTCCTACACTAGTTAAGTCTTCATCGGCTCATGCAAGCAACAATAGTGGTGGCAACAATGACTCCAGTAGCGTACTAAGTGATGACCAAGCAGTGTCAAGCACCACTCAAGCATCAAGTTTTTTTCCGCGCATTTTGCCTTCAAAGAAAAACCGCAAGGCAAAGTCAGATTTTGGCCTATTGGTTGGCGGAGCACGCCTTCCTGAACTGATGGCAGAACCCACCAATGTGAGATCAATGTCATTTGTAGGAACACATGAGTATCTTGCTCCTGAGATAATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGGATCTTCTTGTATGAGCTGTTGCATGGAGCAACCCCTTTCAAGGGTGCAGGGTATAAAGCCACACTTTTTAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCCCAGGTCAGTGCAGTGGCTCGTGACCTTATTAGGGGATTGCTGGTGAAAGAGCCTCAGAAAAGAATTGCATATAAAAGAGGAGCTACAGAGATAAAACAACACCCATTTTTTGAGGGAATGAACTGGGCTCTAGTTAGAAGTGCCACACCTCCTCACATACCAGATGCAATAGACTTCTCCAAGTATGCTAGCAAAGAGACAGCACCCCCAGTGGACAAGAAGATGGCAGATATTGCTAATGATAAAAACAGCACTAATGCTAATGATTCTTACATAGATTTTGAGTATTTTTAG 1755 0.4467 MDNPVSLFMSNQSSISNPVKMPDLPPEMSYNVSEEAHPSAHSSCANSGKNSPAHPNNVNQAEKETFTATTVHNSGSETGHLDHISKPDNTKLEGKSRPQRLIPPNRNISDFNQHQSPRTTKKPSPNPDHHHSKTMSVSTPHAKTPGSGASSRSDSLESTSAPIRPHTGGDVRWEAINMVSRCGPLNLSHFRLLKRIGYGDIGSVYLVDLKGTRTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGDLHSLRQKQPNKCFPEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHASNNSGGNNDSSSVLSDDQAVSSTTQASSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGATPFKGAGYKATLFNVVGQPLRFPETPQVSAVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPDAIDFSKYASKETAPPVDKKMADIANDKNSTNANDSYIDFEYF 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00446 584 FunFam Serine/threonine-protein kinase D6PK-like 188 273 - -
Phco10g00446 584 MobiDBLite consensus disorder prediction 79 95 - -
Phco10g00446 584 MobiDBLite consensus disorder prediction 35 78 - -
Phco10g00446 584 PANTHER FLIPPASE KINASE 1-RELATED 45 550 - -
Phco10g00446 584 SMART serkin_6 190 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00446 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Phco10g00446 584 MobiDBLite consensus disorder prediction 130 162 - -
Phco10g00446 584 ProSiteProfiles Protein kinase domain profile. 190 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00446 584 MobiDBLite consensus disorder prediction 1 167 - -
Phco10g00446 584 FunFam Serine/threonine-protein kinase AGC1-7 417 542 - -
Phco10g00446 584 MobiDBLite consensus disorder prediction 1 19 - -
Phco10g00446 584 Gene3D Phosphorylase Kinase; domain 1 188 273 - -
Phco10g00446 584 Gene3D Transferase(Phosphotransferase) domain 1 418 542 - -
Phco10g00446 584 Pfam Protein kinase domain 191 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00446 584 Pfam Protein kinase domain 415 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00446 584 SUPERFAMILY Protein kinase-like (PK-like) 187 547 IPR011009 -
Phco10g00446 584 FunFam serine/threonine-protein kinase D6PK-like 274 341 - -
Phco10g00446 584 Gene3D Transferase(Phosphotransferase) domain 1 274 344 - -
Phco10g00446 584 MobiDBLite consensus disorder prediction 102 122 - -
Phco10g00446 584 MobiDBLite consensus disorder prediction 350 371 - -
Phco10g00446 584 CDD STKc_phototropin_like 188 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00446 Phco-Chr10 4197276 4200408 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco10g00446 Pkinase 8.9e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00446 10 4197276 4200408 Phco9g01979 9 44692715 44696208 PCT